Information on SUBCLASS 2.3.12 |
Subclass Accession number: 4590
Subclass: 2.3.12 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 11.8 +/- 12.8 Average RMSD (Å) : 0.825 +/- 0.126 Consensus geometry
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Consensus Sequence: | hphpXX |
(φψ)-conformation: | aabpaa |
Pattern: | x | [DR] | [ADQ] | [AILM] | x | [DRS] | [AFT] | [LMWY] | x | x | x | [EHKN] | [AG] | [ERSY] | [LMV] | [DHNS] | x | [AKV] | [ERT] | x | [AGMT] | x | [LVY] | [CGKL] |
Conservation: | -1.078 | 1.656 | -0.150 | 0.357 | -0.016 | 0.070 | 0.049 | 0.677 | -1.557 | -0.526 | -0.600 | 0.756 | 1.971 | -0.759 | 1.769 | 0.756 | 0.081 | -0.036 | 0.423 | -1.397 | -0.839 | -0.453 | 0.642 | -1.796 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gqi_A_608 | 1gqi | A | 623 | 646 | VRAMQRTWDQQEAYVDAARFAQVK | HHHHHHHHHTTGGGS-HHHHHHHH | aaaaaaaaaaaaaabpaaaaaaaa |
1hs6_A_581 | 1hs6 | A | 581 | 604 | HDQAVRTYQEHKASMHPVTAMLVG | HHHHHHHHHHHGGGS-HHHHHHHH | aaaaaaaaaaaaaaxxaaaaaaaa |
1re0_B_135 | 1re0 | B | 135 | 158 | NRDIASFLFLNNGRLNKKTIGLLL | HHHHHHHHHHHGGGS-HHHHHHHH | aaaaaaaaaaaaaabxaaaaaaaa |
1rwh_A_131 | 1rwh | A | 133 | 156 | PRALADAMVLLHAELSAAERTAYC | HHHHHHHHHHTTTTS-HHHHHHHH | aaaaaaaaaaaaaaxxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gqi_A_608 | 1gqi | A | COCOBALT (II) ION | W - 609 |
1gqi_A_608 | 1gqi | A | COCOBALT (II) ION | Q - 610 |
1gqi_A_608 | 1gqi | A | COCOBALT (II) ION | Q - 622 |
1gqi_A_608 | 1gqi | A | EDO1,2-ETHANEDIOL | R - 624 |
1gqi_A_608 | 1gqi | A | COCOBALT (II) ION | A - 625 |
1gqi_A_608 | 1gqi | A | COCOBALT (II) ION | M - 626 |
1gqi_A_608 | 1gqi | A | EDO1,2-ETHANEDIOL | Q - 627 |
1gqi_A_608 | 1gqi | A | EDO1,2-ETHANEDIOL | R - 628 |
1gqi_A_608 | 1gqi | A | COCOBALT (II) ION | T - 629 |
1gqi_A_608 | 1gqi | A | EDO1,2-ETHANEDIOL | D - 631 |
1gqi_A_608 | 1gqi | A | COCOBALT (II) ION | R - 641 |
1gqi_A_608 | 1gqi | A | COCOBALT (II) ION | Q - 644 |
1gqi_A_608 | 1gqi | A | EDO1,2-ETHANEDIOL | K - 646 |
1gqi_A_608 | 1gqi | A | EDO1,2-ETHANEDIOL | A - 647 |
1gqi_A_608 | 1gqi | A | EDO1,2-ETHANEDIOL | Q - 650 |
1rwh_A_131 | 1rwh | A | GAD2,6-ANHYDRO-3-DEOXY-D-ERYTHRO-HEX-2-ENONIC ACID | R - 134 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gqi_A_608 | 1gqi | A | BC1EDO BINDING SITE FOR CHAIN A | Q - 627 |
1gqi_A_608 | 1gqi | A | BC1EDO BINDING SITE FOR CHAIN A | D - 631 |
1gqi_A_608 | 1gqi | A | BC1EDO BINDING SITE FOR CHAIN A | K - 646 |
1gqi_A_608 | 1gqi | A | BC1EDO BINDING SITE FOR CHAIN A | Q - 650 |
Clusters included in this Subclass |
CLUSTER: HH.6.114 |