ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.4.2

Subclass Accession number: 4604
Subclass: 2.4.2

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 16.5 +/- 18.8
Average RMSD (Å) : 0.842 +/- 0.243

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	pXhpXp
(φψ)-conformation:	aapbaa

Pattern:	[AILMV]	[aekr]	[cdekrs]	x	[ILTV]	[DNPST]	x	[deky]	x	[AFILVY]
Conservation:	1.379	-0.273	-0.512	-1.317	1.533	0.631	-1.013	0.097	-1.006	0.483

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c3c_A_397	1c3c	A	399	408	VKKLVTKEEL	HHTT--HHHH	aaaabxaaaa
1d0q_A_7	1d0q	A	13	22	IRRGVDIVDV	HHHH--HHHH	aaaabbaaaa
1g0w_A_29	1g0w	A	30	39	MAKVLTPELY	HHHH--HHHH	aaaaxbaaaa
1j1u_A_112	1j1u	A	121	130	LALKTTLKRA	HHHHS-HHHH	aaaabxaaaa
1jti_A_252	1jti	A	255	264	LESIINFEKL	HHHH-SHHHH	aaaaxbaaaa
1m15_A_26	1m15	A	27	36	LKKHLTKDVF	HHHH--HHHH	aaaaxxaaaa
1m6y_A_180	1m6y	A	187	196	VREALPSYEI	HHHHS-HHHH	aaaabxaaaa
1nni_1_80	1nni	1	85	94	ALDFLSSEQF	HHHH--HHHH	aaaaxbaaaa
1ptm_A_172	1ptm	A	172	181	IADAITPALL	HHHH--HHHH	aaaaxbaaaa
1qh4_A_29	1qh4	A	30	39	MAKVLTLDLY	HHHH--HHHH	aaaaxbaaaa
1sw6_A_448	1sw6	A	449	458	ILENLDLKWI	HHHH-SHHHH	aaaaxbaaaa
1v9c_A_74	1v9c	A	76	85	IACGLNPERL	HHHHS-HHHH	aaaaxpaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j1u_A_112	1j1u	A	MGMAGNESIUM ION	D - 113
1j1u_A_112	1j1u	A	MGMAGNESIUM ION	N - 117
1j1u_A_112	1j1u	A	MGMAGNESIUM ION	R - 120
1m6y_A_180	1m6y	A	MSESELENOMETHIONINE	T - 180
1m6y_A_180	1m6y	A	MSESELENOMETHIONINE	L - 183
1nni_1_80	1nni	1	MSESELENOMETHIONINE	G - 80
1nni_1_80	1nni	1	MSESELENOMETHIONINE	L - 82
1nni_1_80	1nni	1	MSESELENOMETHIONINE	K - 83
1nni_1_80	1nni	1	MSESELENOMETHIONINE	L - 86
1nni_1_80	1nni	1	MSESELENOMETHIONINE	F - 94
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	I - 172
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	I - 176
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	L - 181
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	I - 185
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	A - 186
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	L - 188
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	H - 189
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	D - 191
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	L - 192
1ptm_A_172	1ptm	A	MSESELENOMETHIONINE	T - 194
1qh4_A_29	1qh4	A	ACTACETATE ION	H - 29

Clusters included in this Subclass

CLUSTER: HH.1.41

CLUSTER: HH.3.88