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Information on SUBCLASS 2.5.8
Subclass Accession number: 4621
Subclass: 2.5.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.5 (>50 %)  2.5.1 (>50 %)  2.5.1.58
GO : GO:0004659 (>50 %)  GO:0008318 (>50 %)  GO:0016765 (>50 %)  
SCOP : 48370 (>50 %)  48439 (>50 %)  48440 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 38.9 +/- 34.6
Average RMSD (Å) : 0.400 +/- 0.173

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XLppXp
(φψ)-conformation: aalbaa
Pattern: [KR]xx[L][AV][EM][DW][L][KR][DR][HP][DS][QT]x[GL]xx[IL][AV][AD][IM][CL][NV][NQ]
Conservation:1.306-0.831-1.3281.782-0.126-0.6020.1651.7821.447-0.3530.5810.332-0.125-1.308-1.576-1.308-0.6020.828-0.126-0.5820.5800.541-1.0590.581
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cli_A_701cli   A7093KLRLAMDLKRHDTIGIDLVAMCVNHHHHHHHTT--SSHHHHHHHHHHHaaaaaaaavbaaaaaaaaaaaaaa
1d8d_A_1661d8d   A172195RRVLVEWLKDPSQELEFIADILNQHHHHHHHHT--TTHHHHHHHHHHHaaaaaaaalbaaaaaaaaaaaaaa
1ld8_A_1661ld8   A172195RRVLVEWLRDPSQELEFIADILNQHHHHHHHHT--TTHHHHHHHHHHHaaaaaaaalbaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d8d_A_1661d8d   A     FII[(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)-METHYL]-PHOSPHONIC ACID Y - 166
1ld8_A_1661ld8   A     FPPFARNESYL DIPHOSPHATE Y - 166
1ld8_A_1661ld8   A     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE Y - 166

Clusters included in this Subclass
CLUSTER: HH.5.297