ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.9.1

Subclass Accession number: 4635
Subclass: 2.9.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 44.2 +/- 29.7
Average RMSD (Å) : 0.370 +/- 0.095

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 0-45

rho (°): 0-45

Consensus Sequence:	hhXGhp
(φψ)-conformation:	aapgaa

Pattern:	[gs]	[ipv]	[lmv]	[de]	[de]	[rwy]	[cglv]	[ilv]	[agn]	[g]	[ail]	[adekrs]	[e]	[itv]	[ny]	[nqrs]	[ast]
Conservation:	0.248	-0.584	0.115	1.259	0.837	-0.368	-1.373	0.257	-0.711	2.207	-0.850	-0.974	1.604	-0.305	0.087	-1.195	-0.254

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1all_B_105	1all	B	105	121	SILDERVLNGLKETYNS	HHHHHHTTTTHHHHHHH	aaaaaaaaxvaaaaaaa
1b8d_A_103	1b8d	A	103	119	GPVDEWGIAGSREVYRA	HHHHHHTTTTHHHHHHH	aaaaaaaapvaaaaaaa
1cpc_A_105	1cpc	A	105	121	GPLDDYLIGGIAEINRT	HHHHHHTTTTHHHHHHH	aaaaaaaaxgaaaaaaa
1eyx_A_103	1eyx	A	103	119	GPLDEWGIAGAREVYRT	HHHHHHTTTTHHHHHHH	aaaaaaaaxvaaaaaaa
1eyx_B_103	1eyx	B	103	119	SVLEDRCLNGLKETYIA	HHHHHHTSTTHHHHHHH	aaaaaaaaxvaaaaaaa
1f99_A_105	1f99	A	105	121	GPMDDYLVAGLEEINRT	HHHHHHTTTTHHHHHHH	aaaaaaaaxgaaaaaaa
1gh0_A_105	1gh0	A	105	121	GPMDEYLIAGIDEINRT	HHHHHHTTTTHHHHHHH	aaaaaaaaxgaaaaaaa
1jbo_A_105	1jbo	A	105	121	GPMDEYLIAGLSEINST	HHHHHHTTTTHHHHHHH	aaaaaaaaxvaaaaaaa
1jbo_B_105	1jbo	B	105	121	SVLDDRCLNGLRETYQA	HHHHHHTTTTHHHHHHH	aaaaaaaaxvaaaaaaa
1kn1_B_105	1kn1	B	105	121	SILDERVLNGLKETYNS	HHHHHHTSTTHHHHHHH	aaaaaaaapvaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	R - 110
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	V - 111
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	L - 112
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	L - 115
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	T - 118
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	Y - 119
1all_B_105	1all	B	CYCPHYCOCYANOBILIN	L - 122
1b8d_A_103	1b8d	A	PEBPHYCOERYTHROBILIN	W - 108
1b8d_A_103	1b8d	A	PEBPHYCOERYTHROBILIN	G - 109
1b8d_A_103	1b8d	A	PEBPHYCOERYTHROBILIN	V - 116
1b8d_A_103	1b8d	A	PEBPHYCOERYTHROBILIN	Y - 117
1cpc_A_105	1cpc	A	CYCPHYCOCYANOBILIN	Y - 110
1cpc_A_105	1cpc	A	CYCPHYCOCYANOBILIN	L - 111
1cpc_A_105	1cpc	A	CYCPHYCOCYANOBILIN	I - 115
1cpc_A_105	1cpc	A	CYCPHYCOCYANOBILIN	I - 118
1cpc_A_105	1cpc	A	CYCPHYCOCYANOBILIN	F - 122
1eyx_A_103	1eyx	A	CYCPHYCOCYANOBILIN	W - 108
1eyx_B_103	1eyx	B	CYCPHYCOCYANOBILIN	R - 108
1eyx_A_103	1eyx	A	CYCPHYCOCYANOBILIN	G - 109
1eyx_B_103	1eyx	B	CYCPHYCOCYANOBILIN	C - 109
1eyx_B_103	1eyx	B	CYCPHYCOCYANOBILIN	L - 113
1eyx_A_103	1eyx	A	CYCPHYCOCYANOBILIN	V - 116
1eyx_B_103	1eyx	B	CYCPHYCOCYANOBILIN	T - 116
1eyx_A_103	1eyx	A	CYCPHYCOCYANOBILIN	Y - 117
1eyx_B_103	1eyx	B	MENN-METHYL ASPARAGINE	L - 120
1eyx_B_103	1eyx	B	CYCPHYCOCYANOBILIN	L - 120
1f99_A_105	1f99	A	CYCPHYCOCYANOBILIN	N - 119
1jbo_B_105	1jbo	B	CYCPHYCOCYANOBILIN	C - 111
1jbo_B_105	1jbo	B	MENN-METHYL ASPARAGINE	L - 122

Clusters included in this Subclass

CLUSTER: HH.3.70