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Information on SUBCLASS 2.17.1
Subclass Accession number: 4646
Subclass: 2.17.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 2

Average sequence ID (%) : 10.0 +/- 0.0
Average RMSD (Å) : 1.000 +/- 0.000

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXGDpp
(φψ)-conformation: aagpaa
Pattern: [QT]x[DR]x[GS][LY][LV][AI][KV][IT][EL][GV][AD][KL][F]xx[G][D][ST][DS][LV]x[DS][QT][IW][EK][EH][LY]x
Conservation:-0.200-0.728-0.376-0.5520.153-0.0230.153-0.552-0.728-0.376-1.080-0.904-0.552-0.7282.618-1.080-0.3762.6182.6180.3290.1530.153-0.7280.153-0.200-0.0230.5050.681-0.023-0.904
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gai_*_531gai   -5382TRDSGLVIKTLVDLFRNGDTDLLSTIEHYIHHHHHHHHHHHHHHHHTT-GGGHHHHHHHHaaaaaaaaaaaaaaaaagxaaaaaaaaaaa
1pa1_A_7641pa1   A766795QLRFSYLAVIEGAKFIMGDSSVQDQWKELSHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHaaaaaaaaaaaaaaaaagxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gai_*_531gai   *     GACDIHYDRO-ACARBOSE R - 54
1gai_*_531gai   *     GACDIHYDRO-ACARBOSE D - 55
1gai_*_531gai   *     MANALPHA-D-MANNOSE Q - 85
1gai_*_531gai   *     MANALPHA-D-MANNOSE A - 86
1gai_*_531gai   *     MANALPHA-D-MANNOSE I - 87
1gai_*_531gai   *     MANALPHA-D-MANNOSE I - 88
1gai_*_531gai   *     MANALPHA-D-MANNOSE Q - 89
1gai_*_531gai   *     MANALPHA-D-MANNOSE G - 90
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gai_*_531gai   * SB1BINDING SUBSITE FOR 1ST RESIDUE OF D-GLUCO-DIHYDROACARBOSER - 54
1gai_*_531gai   * SB1BINDING SUBSITE FOR 1ST RESIDUE OF D-GLUCO-DIHYDROACARBOSED - 55

Clusters included in this Subclass
CLUSTER: HH.5.320