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Information on SUBCLASS 3.1.7
Subclass Accession number: 4653
Subclass: 3.1.7 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 10.9 +/- 13.0
Average RMSD (Å) : 0.723 +/- 0.164

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXchphX
(φψ)-conformation: aalppaa
Pattern: xxxx[aeknqrs][dgn][gilmvy][DNPS][acgilmpw]xx[cfgilmvy]x
Conservation:-0.592-0.399-0.659-0.5960.1612.4280.0341.808-0.885-0.204-0.784-0.052-0.260
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aih_A_2811aih   A289301HFMMNGGNILVLKHHHHTT--HHHHHaaaaavxxaaaaa
1b8d_A_1131b8d   A116128VYRALNLPGSAYIHHHHTT--HHHHHaaaaalbxaaaaa
1c7q_A_2111c7q   A213225PIAVAGLNIDRMMHHHHTT--HHHHHaaaaavxxaaaaa
1ez4_A_2111ez4   A214226VAKEQGVSDDDLAHHHHTT--HHHHHaaaaavbxaaaaa
1ezm_*_2651ezm   -275287SAQNRNYSAADVTHHHHTT--HHHHHaaaaavbxaaaaa
1fs7_A_2871fs7   A287299IHGQKGVSCADCHHHHHTT--HHHHHaaaaavxxaaaaa
1kp8_A_891kp8   A105117KAVAAGMNPMDLKHHHHTT--HHHHHaaaaagxxaaaaa
1nk4_A_6691nk4   A673685EAFRRDLDIHTKTHHHHTT--HHHHHaaaaalxxaaaaa
1nv8_A_601nv8   A7183EKRASGYPLHYILHHHHTT--HHHHHaaaaagpxaaaaa
1ols_A_1161ols   A118130VLMYRDYPLELFMHHHHTT--HHHHHaaaaavxxaaaaa
1owl_A_3491owl   A359371LTKDLIIDWRRGEHHHTS---THHHHaaaaalbpaaaaa
1rkx_A_3221rkx   A334346KNWLSGTDMHEYSHHHHTT--HHHHHaaaaavxxaaaaa
1ujp_A_2301ujp   A234246RALEEGRSLAPLLHHHHTT--HHHHHaaaaavxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN V - 116
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN Y - 117
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN L - 120
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN N - 121
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN L - 122
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN P - 123
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN A - 126
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN Y - 127
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN A - 130
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN T - 134
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN R - 135
1b8d_A_1131b8d   A     PEBPHYCOERYTHROBILIN R - 137
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 287
1fs7_A_2871fs7   A     CACALCIUM ION I - 287
1fs7_A_2871fs7   A     ACTACETATE ION I - 287
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 288
1fs7_A_2871fs7   A     CACALCIUM ION H - 288
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 289
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 291
1fs7_A_2871fs7   A     CACALCIUM ION K - 291
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 293
1fs7_A_2871fs7   A     CACALCIUM ION V - 293
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 294
1fs7_A_2871fs7   A     CACALCIUM ION S - 294
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 295
1fs7_A_2871fs7   A     CACALCIUM ION C - 295
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 296
1fs7_A_2871fs7   A     CACALCIUM ION A - 296
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 297
1fs7_A_2871fs7   A     CACALCIUM ION D - 297
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 298
1fs7_A_2871fs7   A     CACALCIUM ION C - 298
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 299
1fs7_A_2871fs7   A     CACALCIUM ION H - 299
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 89
1kp8_A_891kp8   A     KO4POTASSIUM ION, 4 WATERS COORDINATED T - 89
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 90
1kp8_A_891kp8   A     KO4POTASSIUM ION, 4 WATERS COORDINATED T - 90
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 91
1kp8_A_891kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 92
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 349
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 350
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 352
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 353
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 356
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 374
1owl_A_3491owl   A     PO4PHOSPHATE ION M - 375
1owl_A_3491owl   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 375
1ujp_A_2301ujp   A     CITCITRIC ACID S - 230
1ujp_A_2301ujp   A     CITCITRIC ACID A - 231
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1aih_A_2811aih   A ACAACTIVE SITE.R - 283

Clusters included in this Subclass
CLUSTER: HH.5.22