ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.1.10

Subclass Accession number: 4656
Subclass: 3.1.10

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 7

Average sequence ID (%) : 15.6 +/- 18.7
Average RMSD (Å) : 0.986 +/- 0.168

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 90-135

rho (°): 45-90

Consensus Sequence:	hXchXhX
(φψ)-conformation:	aalppaa

Pattern:	[afmtv]	[agks]	[ehrs]	[ehq]	[dekqt]	[agm]	x	[GN]	[ILV]	[GNPT]	x	[aekrt]	[EHQ]	[afgi]
Conservation:	-0.796	-0.216	-0.058	0.281	-0.328	-0.650	-0.922	2.169	1.517	0.088	-0.866	-0.589	1.343	-0.972

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bxc_A_217	1bxc	A	217	230	FAHETMAGLNFVHA	HHHHHTTT--HHHH	aaaaaaavxxaaaa
1gu6_A_437	1gu6	A	438	451	EKAQQAIGLNMEQI	HHHHHHTT--HHHH	aaaaaaagxxaaaa
1ith_A_91	1ith	A	91	104	VPSHDAMGITPKHF	HHHHHTTT--HHHH	aaaaaaavbxaaaa
1kr7_A_62	1kr7	A	66	79	ASRHKGRNVGSAEF	HHHHHTTT--HHHH	aaaaaaalbbaaaa
1mba_*_81	1mba	-	92	105	AKEHVGFGVGSAQF	HHHHHHTT--HHHH	aaaaaaavxbaaaa
1qf5_A_76	1qf5	A	83	96	MKELEDRGIPVRER	HHHHHTTT--HHHH	aaaaaaavbxaaaa
1xim_A_218	1xim	A	218	231	TGHEQMSNLNFTQG	HHHHHTTT--HHHH	aaaaaaavxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ith_A_91	1ith	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 93
1ith_A_91	1ith	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 94
1ith_A_91	1ith	A	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 97
1ith_A_91	1ith	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 99
1ith_A_91	1ith	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 103
1ith_A_91	1ith	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 104
1ith_A_91	1ith	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 107
1ith_A_91	1ith	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 108
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 65
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 68
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 69
1kr7_A_62	1kr7	A	OXYOXYGEN MOLECULE	H - 69
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 72
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 74
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	E - 78
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 79
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 82
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 83
1kr7_A_62	1kr7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 86
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 91
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	E - 94
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 95
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 98
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 100
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 104
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 105
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 108
1mba_*_81	1mba	*	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 112
1xim_A_218	1xim	A	COCOBALT (II) ION	H - 220
1xim_A_218	1xim	A	XYLD-XYLITOL	H - 220

Clusters included in this Subclass

CLUSTER: HH.5.70