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Information on SUBCLASS 3.1.16
Subclass Accession number: 4662
Subclass: 3.1.16 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003700 (>75 %)  GO:0003707 (>75 %)  GO:0004872 (>75 %)  GO:0004879 (>75 %)  GO:0005496 (>75 %)  
SCOP : 48507 (>75 %)  48508 (>75 %)  48509 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 20.6 +/- 24.0
Average RMSD (Å) : 0.450 +/- 0.238

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: chXXppp
(φψ)-conformation: aalppaa
Pattern: [PSTV][EQS][EKN][FLM]x[DKR][LMV][GQ][HMV][DS][KQTY][DET][AE]xx[CL]x
Conservation:-0.9280.2210.3870.610-1.159-0.0050.6760.447-0.6050.814-0.9280.2300.665-0.812-1.8862.437-0.164
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a28_A_7921a28   A805821PQEFVKLQVSQEEFLCMHHHHHHHT--HHHHHHHaaaaaaalpxaaaaaaa
1cyo_*_551cyo   -5571TENFEDVGHSTDARELSHHHHHHTT--HHHHHHHaaaaaaalxxaaaaaaa
1mvc_A_3541mvc   A354370VSKMRDMQMDKTELGCLHHHHHHTT--HHHHHHHaaaaaaalpxaaaaaaa
1nhz_A_6391nhz   A650666SSELHRLQVSYEEYLCMHHHHHHTT--HHHHHHHaaaaaaalxxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a28_A_7921a28   A     STRPROGESTERONE F - 794
1a28_A_7921a28   A     STRPROGESTERONE L - 797
1a28_A_7921a28   A     STRPROGESTERONE M - 801
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE N - 57
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 58
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 61
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE G - 62
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE H - 63
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 64
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE D - 66
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 67
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 68
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 70
1cyo_*_551cyo   *     HEMPROTOPORPHYRIN IX CONTAINING FE S - 71
1nhz_A_6391nhz   A     48611-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE M - 639
1nhz_A_6391nhz   A     48611-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE Q - 642
1nhz_A_6391nhz   A     48611-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE C - 643
1nhz_A_6391nhz   A     HEZHEXANE-1,6-DIOL K - 644
1nhz_A_6391nhz   A     HEZHEXANE-1,6-DIOL H - 645
1nhz_A_6391nhz   A     48611-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE M - 646
1nhz_A_6391nhz   A     HEZHEXANE-1,6-DIOL M - 646
1nhz_A_6391nhz   A     HEZHEXANE-1,6-DIOL Y - 648
1nhz_A_6391nhz   A     HEZHEXANE-1,6-DIOL K - 667

Clusters included in this Subclass
CLUSTER: HH.3.202