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Information on SUBCLASS 3.3.1
Subclass Accession number: 4680
Subclass: 3.3.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 79

Average sequence ID (%) : 12.8 +/- 15.1
Average RMSD (Å) : 0.618 +/- 0.238

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXpXpXX
(φψ)-conformation: aapapaa
Pattern: xxxxx[adegnqst]x[cdehknqrstwy]xxxx
Conservation:-1.369-0.244-0.543-0.221-0.1792.038-0.0141.316-0.915-0.565-0.4911.187
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b3u_A_1271b3u   A132143KRLAGGDWFTSRHHHHT-SSHHHHaaaaapaxaaaa
1b3u_A_1591b3u   A170181RNLCSDDTPMVRHHHHT-S-HHHHaaaaaxaxaaaa
1b3u_A_2041b3u   A209220SNLASDEQDSVRHHHHT-S-HHHHaaaaaxaxaaaa
1b3u_A_2441b3u   A248259RQAAEDKSWRVRHHHHT-SSHHHHaaaaaxaxaaaa
1b3u_A_2821b3u   A287298QNLMKDCEAEVRHHHHT-SSHHHHaaaaaxaxaaaa
1b3u_A_3251b3u   A330341KELVSDANQHVKHHHHT-S-HHHHaaaaapaxaaaa
1b3u_A_3651b3u   A369380LAQLKDECPEVRHHHHT-S-HHHHaaaaaxaxaaaa
1b3u_A_3961b3u   A408419VELAEDAKWRVRHHHHT-SSHHHHaaaaapaxaaaa
1b3u_A_4401b3u   A447458MAWLVDHVYAIRHHGGG-SSHHHHaaaaaxaxaaaa
1b3u_A_5211b3u   A525536LRMAGDPVANVRHHGGG-S-HHHHaaaaapaxaaaa
1b3u_A_5521b3u   A564575EKLTQDQDVDVKHHHTT-SSHHHHaaaaaxaxaaaa
1d5a_A_4481d5a   A465476KKMKATVDPIERHHHHH---HHHHaaaaaxaxaaaa
1dbh_A_3451dbh   A359370QLEEKSEDQEDKHHHHH-S-HHHHaaaaapabaaaa
1dow_A_1461dow   A162173LKLRNAGNEQDLHHHHT-SSHHHHaaaaapabaaaa
1dps_A_1141dps   A134145KAIGEAKDDDTAHHHHH--SHHHHaaaaaxaxaaaa
1dvp_A_401dvp   A4859KKKMNSPNPHSSHHHHT-SSHHHHaaaaaxaxaaaa
1dvp_A_841dvp   A92103SFLESTPHENVRHHHHH-S-HHHHaaaaaxabaaaa
1ee4_A_2591ee4   A263274AKLIYSMDTETLHHHTT-S-HHHHaaaaaxaxaaaa
1ee4_A_3001ee4   A305316VELLSHESTLVQHHHTT-S-HHHHaaaaaxabaaaa
1ee4_A_3421ee4   A347358RLLLSSPKENIKHHHTT-SSHHHHaaaaaxaxaaaa
1ee4_A_4301ee4   A434445CDLLEIADNRIIHHGGGSS-HHHHaaaaaxabaaaa
1ee4_A_4821ee4   A487498FNCQQNENDKIYHHHTT-S-HHHHaaaaaxaxaaaa
1ee4_A_891ee4   A93104TQQLNSDDMQEQHHHHT-S-HHHHaaaaaxaxaaaa
1f20_A_11061f20   A11111122QFASLATNEKEKHHHTTB--HHHHaaaaaxabaaaa
1f44_A_1391f44   A147158SLMENSDRCQDIHHHTT---HHHHaaaaapaxaaaa
1g3j_C_2371g3j   C241252VKMLGSPVDSVLHHTTT-S-HHHHaaaaaxaxaaaa
1g3j_C_6371g3j   C641652TELLHSRNEGVAHHHTT-S-HHHHaaaaapaxaaaa
1gwc_A_1101gwc   A114125RQWLRGKTEEEKHHHHH-SSHHHHaaaaaxaxaaaa
1h6g_A_4131h6g   A436447LACSISNNEEGVHHHTT---HHHHaaaaabaxaaaa
1he1_A_1441he1   A154165GIRAGSQVEESRHHHHH-S-HHHHaaaaaxabaaaa
1hf8_A_561hf8   A6475FERTTNSSWVVVHHHTTSS-HHHHaaaaaxaxaaaa
1hn0_A_3361hn0   A348359RAYVLEKDPTQKHHHHH--SHHHHaaaaaxaxaaaa
1hx8_A_581hx8   A6677IERSQNANWVVVHHHHT-SSHHHHaaaaaxaxaaaa
1ibr_B_2121ibr   B223234CEATQCPDTRVRHHHTT-SSHHHHaaaaaxwxaaaa
1ibr_B_2601ibr   B265276IEAMKSDIDEVAHHHHH-SSHHHHaaaaapaxaaaa
1ibr_B_3631ibr   B372383KEHIKNPDWRYRHHHTT-SSHHHHaaaaapaxaaaa
1ibr_B_4091ibr   B414425IELMKDPSVVVRHHGGG-S-HHHHaaaaaxaxaaaa
1j2j_B_1721j2j   B179190ARLLKSSHPEDLHHHHT-S-HHHHaaaaaxaxaaaa
1j7n_A_1681j7n   A175186NTIKNASDSDGQHHHHTSSSSHHHaaaaaxaxaaaa
1j7n_A_7331j7n   A741752FRLMHSTDHAERHHHHT-SSHHHHaaaaaxaxaaaa
1jdh_A_1521jdh   A157168TKLLNDEDQVVVHHHHT-S-HHHHaaaaaxaxaaaa
1jdh_A_2361jdh   A241252VKMLGSPVDSVLHHHTT-S-HHHHaaaaaxabaaaa
1jdh_A_3991jdh   A406417VQLLGSDDINVVHHHTT-S-HHHHaaaaaxaxaaaa
1jdh_A_5961jdh   A600611VQLLYSPIENIQHHGGG-S-HHHHaaaaaxaxaaaa
1jdh_A_6371jdh   A641652TELLHSRNEGVAHHGGG-SSHHHHaaaaaxaxaaaa
1jwy_A_6051jwy   A609620LCFKDSSDNVVTHHHHT-SSHHHHaaaaaxaxaaaa
1k4t_A_4541k4t   A462473REDWKSKEMKVRHHHTT-SSHHHHaaaaapaxaaaa
1kgn_A_1391kgn   A149160MSYYNGDDPLKKHHHHTSS-HHHHaaaaaxabaaaa
1kk8_A_6041kk8   A608619ALLGASKEPLVAHHHHT-SSHHHHaaaaaxaxaaaa
1kp8_A_3391kp8   A351362QQIEEATSDYDRHHHHS--SHHHHaaaaaxabaaaa
1m5w_A_1571m5w   A157168GCYADAKTDAEQHHHHH--SHHHHaaaaapabaaaa
1nzn_A_351nzn   A4354WCLVRTRYNDDIHHHTTSSSHHHHaaaaaxaxaaaa
1oaa_*_2051oaa   -209220LARETSKDPELRHHHHH-S-HHHHaaaaapaxaaaa
1omr_A_1801omr   A182193ILRLIQFEPQKVHHHHH---HHHHaaaaapaxaaaa
1oqc_A_431oqc   A5566IFSKFYPCEECAHHHHH-S-HHHHaaaaapabaaaa
1ovn_A_1651ovn   A177188AKQEQLTDPEQQHHHHH--SHHHHaaaaaxaxaaaa
1oyz_A_1261oyz   A134145QITAFDKSTNVRHHHTT-S-HHHHaaaaapaxaaaa
1oyz_A_1611oyz   A165176INLLKDPNGDVRHHHHT-SSHHHHaaaaaxaxaaaa
1oyz_A_251oyz   A2940FRLLDDHNSLKRHHHTT-SSHHHHaaaaaxaxaaaa
1oyz_A_531oyz   A6071IEFCSDKNYIRRHHHHT-SSHHHHaaaaaxaxaaaa
1poc_*_611poc   -6980DCLKNSADTISSHHHHT-S-HHHHaaaaaxaxaaaa
1q1s_C_1631q1s   C168179ISLLASPHAHISHHHTT-S-HHHHaaaaapaxaaaa
1q1s_C_2461q1s   C257268VRLLHHNDPEVLHHHTT-S-HHHHaaaaaxaxaaaa
1q1s_C_2951q1s   C299310VKLLGATELPIVHHHHT-S-HHHHaaaaapaxaaaa
1q1s_C_4701q1s   C474485EALQRHENESVYHHHHT-SSHHHHaaaaaxaxaaaa
1q1s_C_781q1s   C8293VKGINSNNLESQHHHHTSS-HHHHaaaaaxabaaaa
1qgr_A_2601qgr   A265276IEAMKSDIDEVAHHHHT-SSHHHHaaaaaxaxaaaa
1qgr_A_3991qgr   A414425IELMKDPSVVVRHHHHT-SSHHHHaaaaaxaxaaaa
1qgr_A_8411qgr   A848859TEGRRSKTNKAKHHHHH-S-HHHHaaaaapaxaaaa
1qht_A_4481qht   A465476RKMKATVDPLEKHHHHT---HHHHaaaaabaxaaaa
1qsa_A_2691qsa   A277288DAIMRSQSTSLIHHHHT---HHHHaaaaaxaxaaaa
1qtr_A_1771qtr   A182193RQRLTSADPQVQHHHHT-S-HHHHaaaaaxaxaaaa
1r2f_A_1291r2f   A139150LAHYVSDEPLKKHHHHHSS-HHHHaaaaaxabaaaa
1r2f_A_741r2f   A7788SLMADAITPHEEHHHTT-SSHHHHaaaaaxabaaaa
1rke_A_1541rke   A177188ERQQELTHQEHRHHHTTBS-HHHHaaaaapaxaaaa
1uiu_A_4281uiu   A436447GEVLATHDETQRHHHHH---HHHHaaaaaxaxaaaa
1ujk_A_431ujk   A5263AHKIQSPQEWEAHHHHT-SSHHHHaaaaaxaxaaaa
1ujk_A_601ujk   A7182ETCMKSCGKRFHHHHHTS--HHHHaaaaaxaxaaaa
1upk_A_2071upk   A215226EKLLHSENYVTKHHHTT-SSHHHHaaaaaxaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dbh_A_3451dbh   A     MSESELENOMETHIONINE P - 346
1dbh_A_3451dbh   A     MSESELENOMETHIONINE V - 347
1dbh_A_3451dbh   A     MSESELENOMETHIONINE C - 350
1dbh_A_3451dbh   A     MSESELENOMETHIONINE L - 351
1dbh_A_3451dbh   A     MSESELENOMETHIONINE F - 354
1dow_A_1461dow   A     MSESELENOMETHIONINE D - 146
1dow_A_1461dow   A     MSESELENOMETHIONINE V - 147
1dow_A_1461dow   A     MSESELENOMETHIONINE Y - 148
1dow_A_1461dow   A     MSESELENOMETHIONINE K - 149
1dow_A_1461dow   A     MSESELENOMETHIONINE L - 150
1dow_A_1461dow   A     MSESELENOMETHIONINE L - 151
1dow_A_1461dow   A     MSESELENOMETHIONINE Q - 153
1dow_A_1461dow   A     MSESELENOMETHIONINE D - 185
1dow_A_1461dow   A     MSESELENOMETHIONINE K - 186
1dow_A_1461dow   A     MSESELENOMETHIONINE L - 187
1dow_A_1461dow   A     MSESELENOMETHIONINE N - 188
1gwc_A_1101gwc   A     GTXS-HEXYLGLUTATHIONE R - 114
1gwc_A_1101gwc   A     GTXS-HEXYLGLUTATHIONE R - 118
1h6g_A_4131h6g   A     MSESELENOMETHIONINE V - 447
1h6g_A_4131h6g   A     MSESELENOMETHIONINE K - 448
1h6g_A_4131h6g   A     CACALCIUM ION K - 448
1h6g_A_4131h6g   A     MSESELENOMETHIONINE L - 449
1h6g_A_4131h6g   A     CACALCIUM ION L - 449
1h6g_A_4131h6g   A     MSESELENOMETHIONINE V - 450
1h6g_A_4131h6g   A     CACALCIUM ION V - 450
1he1_A_1441he1   A     GDPGUANOSINE-5'-DIPHOSPHATE R - 146
1he1_A_1441he1   A     AF3ALUMINUM FLUORIDE R - 146
1he1_A_1441he1   A     MGMAGNESIUM ION R - 146
1he1_A_1441he1   A     AF3ALUMINUM FLUORIDE T - 150
1j2j_B_1721j2j   B     IODIODIDE ION E - 173
1j2j_B_1721j2j   B     IODIODIDE ION K - 176
1j2j_B_1721j2j   B     IODIODIDE ION M - 177
1j2j_B_1721j2j   B     IODIODIDE ION R - 180
1j7n_A_7331j7n   A     ZNZINC ION A - 734
1j7n_A_7331j7n   A     ZNZINC ION E - 735
1j7n_A_7331j7n   A     ZNZINC ION A - 738
1kgn_A_1391kgn   A     FEFE (III) ION L - 167
1kgn_A_1391kgn   A     OF3FERRIC ION, 1 WATER COORDINATED L - 167
1kgn_A_1391kgn   A     FEFE (III) ION E - 168
1kgn_A_1391kgn   A     OF3FERRIC ION, 1 WATER COORDINATED E - 168
1nzn_A_351nzn   A     GOLGLYCEROL R - 49
1nzn_A_351nzn   A     GOLGLYCEROL Y - 50
1nzn_A_351nzn   A     GOLGLYCEROL N - 51
1nzn_A_351nzn   A     GOLGLYCEROL D - 52
1nzn_A_351nzn   A     GOLGLYCEROL D - 53
1nzn_A_351nzn   A     GOLGLYCEROL R - 55
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE D - 205
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 206
1oaa_*_2051oaa   *     OAAOXALOACETATE ION M - 206
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 207
1oaa_*_2051oaa   *     OAAOXALOACETATE ION Q - 207
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 208
1oaa_*_2051oaa   *     OAAOXALOACETATE ION Q - 208
1oaa_*_2051oaa   *     OAAOXALOACETATE ION A - 210
1oaa_*_2051oaa   *     OAAOXALOACETATE ION R - 211
1oaa_*_2051oaa   *     OAAOXALOACETATE ION L - 223
1oqc_A_431oqc   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 56
1oqc_A_431oqc   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 60
1oqc_A_431oqc   A     FADFLAVIN-ADENINE DINUCLEOTIDE C - 62
1oqc_A_431oqc   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 64
1oqc_A_431oqc   A     FADFLAVIN-ADENINE DINUCLEOTIDE C - 65
1oqc_A_431oqc   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 66
1oqc_A_431oqc   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 68
1oqc_A_431oqc   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 69
1oyz_A_531oyz   A     MSESELENOMETHIONINE F - 62
1oyz_A_531oyz   A     MSESELENOMETHIONINE C - 63
1oyz_A_531oyz   A     MSESELENOMETHIONINE S - 64
1oyz_A_531oyz   A     MSESELENOMETHIONINE R - 71
1oyz_A_531oyz   A     MSESELENOMETHIONINE D - 72
1oyz_A_531oyz   A     MSESELENOMETHIONINE G - 74
1oyz_A_531oyz   A     MSESELENOMETHIONINE A - 75
1oyz_A_531oyz   A     MSESELENOMETHIONINE L - 78
1oyz_A_1611oyz   A     MSESELENOMETHIONINE L - 167
1oyz_A_1611oyz   A     MSESELENOMETHIONINE L - 168
1oyz_A_1611oyz   A     MSESELENOMETHIONINE K - 169
1oyz_A_1611oyz   A     MSESELENOMETHIONINE R - 176
1oyz_A_1611oyz   A     MSESELENOMETHIONINE N - 177
1oyz_A_1611oyz   A     MSESELENOMETHIONINE A - 180
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE F - 67
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE F - 82
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE V - 83
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE M - 86
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE Y - 87
1r2f_A_741r2f   A     FEFE (III) ION I - 94
1r2f_A_741r2f   A     FEFE (III) ION M - 97
1r2f_A_741r2f   A     FEFE (III) ION E - 98
1r2f_A_741r2f   A     FEFE (III) ION H - 101
1r2f_A_741r2f   A     FEFE (III) ION A - 102
1r2f_A_1291r2f   A     FEFE (III) ION E - 158
1ujk_A_431ujk   A     IODIODIDE ION R - 49
1ujk_A_431ujk   A     IODIODIDE ION L - 50
1ujk_A_431ujk   A     IODIODIDE ION L - 51
1ujk_A_431ujk   A     IODIODIDE ION H - 53
1ujk_A_431ujk   A     IODIODIDE ION K - 54
1ujk_A_431ujk   A     IODIODIDE ION S - 57
1ujk_A_431ujk   A     IODIODIDE ION P - 58
1ujk_A_431ujk   A     IODIODIDE ION Q - 59
1ujk_A_431ujk   A     IODIODIDE ION E - 62
1ujk_A_601ujk   A     IODIODIDE ION C - 77
1upk_A_2071upk   A     MSESELENOMETHIONINE Y - 207
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 218
1upk_A_2071upk   A     MSESELENOMETHIONINE N - 222
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 230
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 233
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 236
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 237
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 238
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gwc_A_1101gwc   A AC5SO4 BINDING SITE FOR CHAIN AR - 114
1he1_A_1441he1   A AC1GDP BINDING SITE FOR CHAIN CR - 146
1oqc_A_431oqc   A CTAPUTATIVE CATALYTIC SITEC - 62
1oqc_A_431oqc   A CTAPUTATIVE CATALYTIC SITEC - 65

Clusters included in this Subclass
CLUSTER: HH.3.12
CLUSTER: HH.3.270
CLUSTER: HH.4.190
CLUSTER: HH.4.4
CLUSTER: HH.5.10
CLUSTER: HH.5.206
CLUSTER: HH.5.6
CLUSTER: HH.6.3
CLUSTER: HH.7.20