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Information on SUBCLASS 3.3.8
Subclass Accession number: 4687
Subclass: 3.3.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 5.6 +/- 7.2
Average RMSD (Å) : 0.950 +/- 0.058

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XXXpXXX
(φψ)-conformation: aapapaa
Pattern: [FGPT][EFKL][EQRT]xxxx[PS][KNQT]xxxxx[AGKQ][AFMV][LW][KTY][AGLY]xx
Conservation:-1.110-0.7810.862-0.8631.356-1.520-0.1242.1270.779-0.124-0.124-0.288-1.192-0.5350.0400.2872.0840.485-0.863-0.124-0.370
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b0u_A_2371b0u   A237257PEQVFGNPQSPRLQQFLKGSLHHHHHHS--SHHHHHHHHHHHaaaaaaaxaxaaaaaaaaaaa
1m56_A_161m56   A1636FFTRWFMSTNHKDIGVLYLFTHHHHHHS---HHHHHHHHHHHaaaaaaapaxaaaaaaaaaaa
1mqi_A_1421mqi   A143163TKEFFRRSKIAVFDKMWTYMRHHHHHHH--SHHHHHHHHHHHaaaaaaapaxaaaaaaaaaaa
1q5z_A_5611q5z   A569589GLRAEILPNDTIKSAALKAQCHHHHHHS-SSHHHHHHHHHHHaaaaaaapaxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m56_A_161m56   A     HEAHEME-A L - 34
1m56_A_161m56   A     HEAHEME-A F - 35
1m56_A_161m56   A     HEAHEME-A G - 37
1m56_A_161m56   A     HEAHEME-A G - 38
1m56_A_161m56   A     HEAHEME-A L - 39
1m56_A_161m56   A     HEAHEME-A G - 41
1m56_A_161m56   A     HEAHEME-A L - 42
1m56_A_161m56   A     HEAHEME-A V - 45
1m56_A_161m56   A     HEAHEME-A T - 48
1m56_A_161m56   A     CACALCIUM ION M - 51
1m56_A_161m56   A     HEAHEME-A M - 51
1m56_A_161m56   A     HEAHEME-A R - 52
1m56_A_161m56   A     CACALCIUM ION M - 53
1m56_A_161m56   A     CACALCIUM ION E - 54
1m56_A_161m56   A     CACALCIUM ION L - 55
1m56_A_161m56   A     HEAHEME-A L - 55
1m56_A_161m56   A     CACALCIUM ION M - 56
1mqi_A_1421mqi   A     FWD2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN -1-YL)-PROPIONIC ACID S - 142
1mqi_A_1421mqi   A     FWD2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN -1-YL)-PROPIONIC ACID T - 143
1mqi_A_1421mqi   A     FWD2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN -1-YL)-PROPIONIC ACID K - 144

Clusters included in this Subclass
CLUSTER: HH.3.184