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Information on SUBCLASS 2.1.4
Subclass Accession number: 469
Subclass: 2.1.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 47

Average sequence ID (%) : 15.8 +/- 17.6
Average RMSD (Å) : 0.345 +/- 0.133

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXcXX
(φψ)-conformation: bblgbb
Pattern: [acfgikltv]xx[adegknqrs][DGKNQST]xx
Conservation:-0.368-0.299-0.488-0.0492.227-0.352-0.670
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1acf_*_601acf   -6066FDLAGVHEEETTEEbbblvbx
1aui_A_3191aui   A323329KYENNVMEEETTEEbxblvbb
1b6a_*_2481b6a   -254260THISGRIEEETTEEbbblvxx
1bdo_*_1141bdo   -118124VEAMKMMEEETTEEbbblvxb
1bm8_*_51bm8   -814ARYSGVDEEETTEEbbblvbx
1bte_A_401bte   A4652KNISGSIEEETTEEbbblvxx
1bup_A_2051bup   A211217TIEDGIFEEETTEEbbblvbx
1bup_A_931bup   A95101VNDAGRPEEETTEEbbblvbw
1cjx_A_2941cjx   A298304SSVEGDKEEETTEEbbblgxb
1d2o_A_6091d2o   A612618DINGTTIEEETTEEbbblgxb
1e42_A_7231e42   A730736THRQGHIEEETTEEbbblvbx
1f39_A_1891f39   A195201IRDSGQVEEETTEEbbblvbx
1fgy_A_2811fgy   A287293ILTDNCLEEETTEEbxbllbb
1fmb_*_101fmb   -1319VLINDTPEEETTEEbxblvbw
1fmb_*_631fmb   -6975IKKKGRHEEETTEEbbblUbb
1fqt_A_171fqt   A2026VESGGTSEEETTEEbbblvbb
1ftr_A_1331ftr   A135141DELDGRKEEETTEEbbblvxx
1g13_A_501g13   A5763KEVAGLWEEETTEEbxblvbx
1g86_A_611g86   A6672SREYGAWEEETTEEbbblvbx
1gx3_A_1621gx3   A167173AQVRGEWEEETTEEbxblvbx
1h0b_A_1401h0b   A145151VELAGATEEETTEEbxblvbb
1hdm_B_191hdm   B2632ISFNKDLEEETTEEbbblvbx
1iup_A_81iup   A1016ILAAGVLEEETTEEbxblvbx
1j1t_A_1481j1t   A154160VNNYGDVEEETTEEbbxlgbx
1j20_A_3351j20   A340346KLYKGNVEEETTEEbbblgbb
1jlx_A_1741jlx   A178184ITINQLPEEETTEEbxblvbw
1js3_A_4361js3   A438444CRLRGQFEEETTEEbbbvvxx
1k20_A_2061k20   A209215FELNGNNEEETTEEbbblvbx
1ktg_A_31ktg   A1218RKLAGKIEEETTEEbbblvbx
1lf6_A_1661lf6   A171177IKANNNEEEETTEEbbblvbx
1mky_A_411mky   A4450VEWYGKTEEETTEEbbblvxb
1nep_A_521nep   A5763GIVMGIPEEETTEEbxblvbw
1nez_G_981nez   G104110VISNSVMEEETTEEbbblvbx
1nh0_A_101nh0   A1319IKIGGQLEEETTEEbbblvxx
1olr_A_1361olr   A141147VNLAGRTEEETTEEbbblvbb
1pfb_A_281pfb   A3541RVKKGVVEEETTEEbbblvxx
1pne_*_631pne   -6369LTLGGQKEEETTEEbbbvvxx
1qcs_A_1351qcs   A138144FSFNDKLEEETTEEbxblvbx
1qmg_A_961qmg   A98104VTLSGHDEEETTEEbbblvbx
1qw2_A_231qw2   A2632IEIGGKVEEETTEEbbblvbx
1r0u_A_21r0u   A1521IEDDGNQEEETTEEbbblgxb
1s18_A_2871s18   A294300EEDSGRVEEETTEEbbblvxb
1sty_*_221sty   -2531LMYKGQPEEETTEEbxblvbw
1uqt_A_2101uqt   A211217HTAWGKAEEETTEEbbblvbx
1vjl_A_701vjl   A7985SLKDNTFEEETTEEbbblvbx
2nlr_A_1362nlr   A141147ASVGGRTEEETTEEMbbvvbx
4fiv_*_154fiv   -1824IFVNGYPEEETTEEbxblvbw
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b6a_*_2481b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM D - 251
1b6a_*_2481b6a   *     COCOBALT (II) ION D - 251
1b6a_*_2481b6a   *     COCOBALT (II) ION F - 252
1b6a_*_2481b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM D - 262
1b6a_*_2481b6a   *     COCOBALT (II) ION D - 262
1b6a_*_2481b6a   *     COCOBALT (II) ION C - 263
1b6a_*_2481b6a   *     COCOBALT (II) ION A - 264
1bdo_*_1141bdo   *     BTNBIOTIN I - 117
1bdo_*_1141bdo   *     BTNBIOTIN E - 119
1bdo_*_1141bdo   *     BTNBIOTIN K - 122
1bdo_*_1141bdo   *     BTNBIOTIN M - 124
1bte_A_401bte   A     NAGN-ACETYL-D-GLUCOSAMINE W - 45
1bte_A_401bte   A     NAGN-ACETYL-D-GLUCOSAMINE N - 47
1bte_A_401bte   A     NAGN-ACETYL-D-GLUCOSAMINE I - 48
1bte_A_401bte   A     NAGN-ACETYL-D-GLUCOSAMINE S - 49
1bte_A_401bte   A     NAGN-ACETYL-D-GLUCOSAMINE G - 50
1bte_A_401bte   A     NAGN-ACETYL-D-GLUCOSAMINE S - 51
1bte_A_401bte   A     NAGN-ACETYL-D-GLUCOSAMINE I - 52
1bup_A_2051bup   A     MGMAGNESIUM ION D - 206
1bup_A_2051bup   A     PIHYDROGENPHOSPHATE ION D - 206
1cjx_A_2941cjx   A     FE2FE (II) ION Q - 309
1cjx_A_2941cjx   A     ACTACETATE ION Q - 309
1cjx_A_2941cjx   A     FE2FE (II) ION F - 311
1cjx_A_2941cjx   A     ACTACETATE ION F - 311
1e42_A_7231e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED H - 731
1e42_A_7231e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED Q - 733
1e42_A_7231e42   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED G - 734
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE W - 281
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE K - 282
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE R - 284
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE Y - 295
1fmb_*_101fmb   *     HYB[2-(2-METHYL-PROPANE-2-SULFONYLMETHYL)-3-NAPHTHALEN-1-YL-PROPIONYL-VALINYL]-PHENYLALANINOL L - 23
1fmb_*_631fmb   *     HYB[2-(2-METHYL-PROPANE-2-SULFONYLMETHYL)-3-NAPHTHALEN-1-YL-PROPIONYL-VALINYL]-PHENYLALANINOL L - 81
1g86_A_611g86   A     NEQN-ETHYLMALEIMIDE V - 63
1g86_A_611g86   A     NEQN-ETHYLMALEIMIDE M - 64
1g86_A_611g86   A     NEQN-ETHYLMALEIMIDE N - 65
1g86_A_611g86   A     NEQN-ETHYLMALEIMIDE W - 72
1js3_A_4361js3   A     142CARBIDOPA R - 447
1k20_A_2061k20   A     MNMANGANESE (II) ION K - 207
1k20_A_2061k20   A     GOLGLYCEROL Q - 220
1k20_A_2061k20   A     GOLGLYCEROL V - 221
1k20_A_2061k20   A     GOLGLYCEROL N - 222
1k20_A_2061k20   A     GOLGLYCEROL T - 223
1ktg_A_31ktg   A     MGMAGNESIUM ION L - 14
1ktg_A_31ktg   A     MGMAGNESIUM ION K - 17
1ktg_A_31ktg   A     MGMAGNESIUM ION E - 19
1mky_A_411mky   A     PO4PHOSPHATE ION D - 55
1nep_A_521nep   A     PO4PHOSPHATE ION H - 56
1nh0_A_101nh0   A     KI23-BENZYLOXYCARBONYLAMINO-2-HYDROXY-4-PHENYL-BUTYRIC ACID L - 23
1pfb_A_281pfb   A     M3LN-TRIMETHYLLYSINE W - 47
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 138
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 140
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 145
1qcs_A_1351qcs   A     MSESELENOMETHIONINE L - 147
1qcs_A_1351qcs   A     MSESELENOMETHIONINE V - 149
1qw2_A_231qw2   A     MSESELENOMETHIONINE I - 23
1qw2_A_231qw2   A     MSESELENOMETHIONINE F - 35
1qw2_A_231qw2   A     MSESELENOMETHIONINE F - 36
1qw2_A_231qw2   A     MSESELENOMETHIONINE K - 37
1qw2_A_231qw2   A     MSESELENOMETHIONINE S - 38
1r0u_A_21r0u   A     GOLGLYCEROL V - 11
1r0u_A_21r0u   A     GOLGLYCEROL F - 26
1sty_*_221sty   *     CACALCIUM ION T - 22
1sty_*_221sty   *     PTPTHYMIDINE-3',5'-DIPHOSPHATE T - 22
1sty_*_221sty   *     CACALCIUM ION R - 35
1sty_*_221sty   *     PTPTHYMIDINE-3',5'-DIPHOSPHATE R - 35
1sty_*_221sty   *     PTPTHYMIDINE-3',5'-DIPHOSPHATE L - 36
1vjl_A_701vjl   A     MSESELENOMETHIONINE K - 74
1vjl_A_701vjl   A     MSESELENOMETHIONINE I - 76
4fiv_*_154fiv   *     1NI4-[2-(2-ACETYLAMINO-3-NAPHTHALEN-1-YL-PROPIONYLAMINO)-3-METHYL-BUTYRYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL) -PROPYL]-AMIDE L - 28
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bte_A_401bte   A NAGGLYCOSYLATION SITEN - 47

Clusters included in this Subclass
CLUSTER: HA.1.110
CLUSTER: HA.1.15
CLUSTER: HA.1.51
CLUSTER: HA.2.19
CLUSTER: HA.3.194
CLUSTER: HA.3.221
CLUSTER: HA.3.25