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Information on SUBCLASS 3.4.6
Subclass Accession number: 4698
Subclass: 3.4.6 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 34.1 +/- 29.9
Average RMSD (Å) : 0.529 +/- 0.345

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXcXhpp
(φψ)-conformation: aalbpaa
Pattern: [APS][FILV][AGILVW][qs][QW][AFMW]x[QR][et][LVY][eksy]xxx[AFK]x[GN]x[GPS][kqtwy][HQ]x[apy][FLVW][ANR][EF][aclt][afiv][ADP][IK][FGLW][AFLM]
Conservation:0.1080.253-1.195-0.3243.196-0.057-1.1621.566-0.2110.160-1.054-0.590-0.367-0.513-0.7220.2661.743-0.3290.299-0.6242.528-0.539-0.7110.098-0.2730.809-0.481-0.769-0.273-0.028-0.604-0.200
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dxr_L_841dxr   L96127AFISWMLREVEISRKLGIGWHVPLAFCVPIFMHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHaaaaaaaaaaaaaaaavbxaaaaaaaaaaaaa
1dxr_M_1111dxr   M123154SLGSWWIRVYSRARALGLGTHIAWNFAAAIFFHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHaaaaaaaaaaaaaaaavbxaaaaaaaaaaaaa
1eys_L_921eys   L104135AFISWALREVEICRKLGIGFHVPFAFSFAIGAHHHHHHHHHHHHHHTTT---HHHHHHHHHHHHaaaaaaaaaaaaaaaavbxaaaaaaaaaaaaa
1eys_M_1121eys   M124155SILLWWVRTYKRAEALGMSQHLSWAFAAAIFFHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHaaaaaaaaaaaaaaaavxbaaaaaaaaaaaaa
1q8i_A_6431q8i   A643674PLAQQFQQELYLRIFRNEPYQEYVRETIDKLMHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHaaaaaaaaaaaaaaaalxxaaaaaaaaaaaaa
1rzh_L_841rzh   L96127AFVSWALREVEICRKLGIGYHIPFAFAFAILAHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHaaaaaaaaaaaaaaaavbxaaaaaaaaaaaaa
1rzh_M_1131rzh   M125156AVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHaaaaaaaaaaaaaaaavxxaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B I - 89
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B C - 92
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B A - 93
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B A - 96
1dxr_L_841dxr   L     BCBBACTERIOCHLOROPHYLL B F - 97
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B F - 97
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B W - 100
1dxr_L_841dxr   L     MQ9MENAQUINONE-9 W - 100
1dxr_L_841dxr   L     MQ9MENAQUINONE-9 R - 103
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B E - 104
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE W - 112
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE W - 113
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE L - 114
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B V - 117
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE G - 117
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B P - 118
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE L - 118
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B A - 120
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B M - 120
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE M - 120
1dxr_L_841dxr   L     BCBBACTERIOCHLOROPHYLL B F - 121
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B F - 121
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE T - 121
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE T - 121
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 122
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B V - 123
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B S - 123
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B S - 123
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE S - 123
1dxr_L_841dxr   L     BCBBACTERIOCHLOROPHYLL B P - 124
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B P - 124
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B L - 124
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B L - 124
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 124
1dxr_L_841dxr   L     BCBBACTERIOCHLOROPHYLL B I - 125
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE G - 125
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE S - 126
1dxr_L_841dxr   L     BCBBACTERIOCHLOROPHYLL B M - 127
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B W - 127
1dxr_L_841dxr   L     BCBBACTERIOCHLOROPHYLL B F - 128
1dxr_L_841dxr   L     BPBBACTERIOPHEOPHYTIN B F - 128
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B W - 128
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE I - 129
1dxr_L_841dxr   L     BCBBACTERIOCHLOROPHYLL B L - 131
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B V - 131
1dxr_M_1111dxr   M     LDALAURYL DIMETHYLAMINE-N-OXIDE S - 133
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B I - 144
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B A - 145
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B N - 147
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B F - 148
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B F - 148
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B A - 151
1dxr_M_1111dxr   M     BPBBACTERIOPHEOPHYTIN B A - 151
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B I - 152
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B F - 154
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B V - 155
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE V - 155
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE L - 156
1dxr_M_1111dxr   M     BCBBACTERIOCHLOROPHYLL B I - 158
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE I - 158
1dxr_M_1111dxr   M     NS5DIHYDRO-NEUROSPORENE G - 159
1eys_L_921eys   L     LDALAURYL DIMETHYLAMINE-N-OXIDE W - 94
1eys_L_921eys   L     LDALAURYL DIMETHYLAMINE-N-OXIDE Q - 95
1eys_L_921eys   L     LDALAURYL DIMETHYLAMINE-N-OXIDE I - 96
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A I - 97
1eys_L_921eys   L     LDALAURYL DIMETHYLAMINE-N-OXIDE T - 98
1eys_L_921eys   L     LDALAURYL DIMETHYLAMINE-N-OXIDE I - 99
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A C - 100
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A A - 101
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A A - 104
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A F - 105
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A F - 105
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A W - 108
1eys_L_921eys   L     MQ8MENAQUINONE 8 W - 108
1eys_L_921eys   L     MQ8MENAQUINONE 8 R - 111
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A E - 112
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE W - 113
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN W - 114
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN L - 115
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN I - 116
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN A - 117
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN G - 118
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN L - 119
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A L - 121
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A L - 121
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN L - 121
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN T - 122
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A S - 124
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A S - 124
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A V - 125
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A I - 125
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A I - 125
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A P - 126
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE L - 126
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A L - 126
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A A - 128
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A W - 128
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A W - 128
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A F - 129
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A F - 129
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE W - 129
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A W - 129
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE V - 130
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A F - 131
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A F - 131
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A A - 132
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A A - 132
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A T - 132
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A I - 133
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A A - 135
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A Y - 136
1eys_L_921eys   L     BPHBACTERIOPHEOPHYTIN A Y - 136
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A V - 138
1eys_L_921eys   L     BCLBACTERIOCHLOROPHYLL A L - 139
1eys_L_921eys   L     LDALAURYL DIMETHYLAMINE-N-OXIDE V - 140
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE H - 144
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A L - 145
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A S - 146
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE W - 147
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A A - 148
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A F - 149
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A F - 149
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE A - 150
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A A - 150
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A A - 151
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A A - 152
1eys_M_1121eys   M     BPHBACTERIOPHEOPHYTIN A A - 152
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE I - 153
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A I - 153
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE F - 154
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A F - 155
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A Y - 156
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN Y - 156
1eys_M_1121eys   M     BGLB-2-OCTYLGLUCOSIDE L - 157
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN L - 157
1eys_M_1121eys   M     BCLBACTERIOCHLOROPHYLL A L - 159
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN L - 159
1eys_M_1121eys   M     CRTSPIRILLOXANTHIN G - 160
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A I - 89
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A C - 92
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A A - 93
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A A - 96
1rzh_L_841rzh   L     BCLBACTERIOCHLOROPHYLL A F - 97
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A F - 97
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL F - 97
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL V - 98
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A W - 100
1rzh_L_841rzh   L     U10UBIQUINONE-10 W - 100
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL A - 101
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL L - 102
1rzh_L_841rzh   L     U10UBIQUINONE-10 R - 103
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A E - 104
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL V - 105
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL Y - 115
1rzh_M_1131rzh   M     SPOSPHEROIDENE W - 115
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A H - 116
1rzh_M_1131rzh   M     SPOSPHEROIDENE L - 116
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A I - 117
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL I - 117
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A P - 118
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL P - 118
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL F - 119
1rzh_M_1131rzh   M     SPOSPHEROIDENE S - 119
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A A - 120
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL A - 120
1rzh_M_1131rzh   M     SPOSPHEROIDENE F - 120
1rzh_L_841rzh   L     BCLBACTERIOCHLOROPHYLL A F - 121
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A F - 121
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL F - 121
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A A - 122
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL A - 122
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A M - 122
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A M - 122
1rzh_M_1131rzh   M     SPOSPHEROIDENE M - 122
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A F - 123
1rzh_M_1131rzh   M     SPOSPHEROIDENE F - 123
1rzh_L_841rzh   L     BCLBACTERIOCHLOROPHYLL A A - 124
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A A - 124
1rzh_L_841rzh   L     HTOHEPTANE-1,2,3-TRIOL I - 125
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A A - 125
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A A - 125
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A V - 126
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A V - 126
1rzh_L_841rzh   L     BCLBACTERIOCHLOROPHYLL A A - 127
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A W - 127
1rzh_L_841rzh   L     BCLBACTERIOCHLOROPHYLL A Y - 128
1rzh_L_841rzh   L     BPHBACTERIOPHEOPHYTIN A Y - 128
1rzh_M_1131rzh   M     U10UBIQUINONE-10 W - 129
1rzh_L_841rzh   L     BCLBACTERIOCHLOROPHYLL A T - 130
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A W - 130
1rzh_L_841rzh   L     BCLBACTERIOCHLOROPHYLL A L - 131
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A T - 133
1rzh_M_1131rzh   M     CDLCARDIOLIPIN M - 142
1rzh_M_1131rzh   M     CDLCARDIOLIPIN G - 143
1rzh_M_1131rzh   M     CDLCARDIOLIPIN K - 144
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A H - 145
1rzh_M_1131rzh   M     CDLCARDIOLIPIN H - 145
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A T - 146
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A A - 147
1rzh_M_1131rzh   M     CDLCARDIOLIPIN W - 148
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A A - 149
1rzh_M_1131rzh   M     CDLCARDIOLIPIN A - 149
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A F - 150
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A F - 150
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A L - 151
1rzh_M_1131rzh   M     CDLCARDIOLIPIN L - 151
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A S - 152
1rzh_M_1131rzh   M     CDLCARDIOLIPIN S - 152
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A A - 153
1rzh_M_1131rzh   M     BPHBACTERIOPHEOPHYTIN A A - 153
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A I - 154
1rzh_M_1131rzh   M     CDLCARDIOLIPIN W - 155
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A L - 156
1rzh_M_1131rzh   M     SPOSPHEROIDENE L - 156
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A W - 157
1rzh_M_1131rzh   M     SPOSPHEROIDENE W - 157
1rzh_M_1131rzh   M     SPOSPHEROIDENE M - 158
1rzh_M_1131rzh   M     SPOSPHEROIDENE V - 159
1rzh_M_1131rzh   M     BCLBACTERIOCHLOROPHYLL A L - 160
1rzh_M_1131rzh   M     SPOSPHEROIDENE L - 160
1rzh_M_1131rzh   M     SPOSPHEROIDENE G - 161

Clusters included in this Subclass
CLUSTER: HH.5.112
CLUSTER: HH.6.66