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Information on SUBCLASS 3.5.1
Subclass Accession number: 4704
Subclass: 3.5.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 29

Average sequence ID (%) : 11.4 +/- 13.3
Average RMSD (Å) : 0.683 +/- 0.195

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXXpXX
(φψ)-conformation: aapabaa
Pattern: x[adegknrst][cdeknqrsty][acfilvy]x[adegknqrt]x[eknpqrst][DHNRST]x[cdenqrsy][adegknqst]xx
Conservation:-1.1310.316-0.6461.332-0.8641.193-0.2810.0032.269-1.0830.0640.098-0.491-0.780
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6j_A_1341a6j   A137150CRRLRAAQSDEELYHHHHHH--SHHHHHaaaaaapabaaaaa
1al3_*_2971al3   -300313VDTAVALRSNEDIEHHHHHH---HHHHHaaaaaapaxaaaaa
1ca1_*_1741ca1   -176189YADILKNKDFNAWSHHHHHH-S-HHHHHaaaaaaxaxaaaaa
1cy5_A_371cy5   A4053EEKVRNEPTQQQRAHHHHHTSSSHHHHHaaaaaaxabaaaaa
1dow_A_1921dow   A192205AKRQQELKDVGNRDHHHHTT---HHHHHaaaaaaxaxaaaaa
1eem_A_1231eem   A127140VGSFIRSQNKEDYAHHHHTT--SHHHHHaaaaaaxabaaaaa
1ezf_A_2701ezf   A274287ITYLSRLRNQSVFNHHHHHT---HHHHHaaaaaaxaxaaaaa
1gz3_A_611gz3   A6982HRNLKKMTSPLEKYHHHHHT---HHHHHaaaaaaxaxaaaaa
1jj2_O_281jj2   O2841QGDIADAITREDVRHHHHHT--SHHHHHaaaaaaxabaaaaa
1js8_A_26461js8   A26512664IALALEQTDFCDFEHHHHHH--SHHHHHaaaaaaxabaaaaa
1k87_A_1611k87   A169182AEALLRIPDKATRDHHHHHTSS-HHHHHaaaaaaxabaaaaa
1kho_A_1741kho   A176189YSNILTNEDFNSWSHHHHHS-S-HHHHHaaaaaaxaxaaaaa
1lla_*_511lla   -6174YEVFWEAGDFNDFIHHHHHT-SSHHHHHaaaaaaxabaaaaa
1mhy_G_111mhy   G1730EAKIAKLTSVDQATHHHHHT--SHHHHHaaaaaaxabaaaaa
1mhy_G_881mhy   G96109IAKIKAAKSKYEAEHHHHHT--SHHHHHaaaaaaxabaaaaa
1mty_G_101mty   G1629VNKIAHVNTLEKAAHHHHHT--SHHHHHaaaaaaxabaaaaa
1mzg_A_71mzg   A1124LRNFLRCANWEEKYHHHHHH-SSHHHHHaaaaaapabaaaaa
1n1c_A_521n1c   A5972RSTLNGIKDDEALLHHHHHH--SHHHHHaaaaaaxabaaaaa
1nvu_S_8191nvu   S836849EKCIVETENLEERVHHHHHT--SHHHHHaaaaaabaxaaaaa
1o0s_A_751o0s   A8396ITKLREQPNDLARYHHHHHHSSSHHHHHaaaaaaxabaaaaa
1omw_A_801omw   A89102IKKYEKLETEEERLHHHHHT--SHHHHHaaaaaaxabaaaaa
1p80_A_5171p80   A528541SFELSKVVRPYIREHHHHHT-SSHHHHHaaaaaaxaxaaaaa
1qls_A_461qls   A4659AAFTQNQKDPGVLDHHHHHH---THHHHaaaaaapaxaaaaa
1qr0_A_261qr0   A2942REKCRRFYHKEDAHHHHHHH-SSHHHHHaaaaaaxaxaaaaa
1qwl_A_4381qwl   A449462GESLAHVTHKEIVDHHHHTT---HHHHHaaaaaaxabaaaaa
1r3c_A_2441r3c   A244257AELLKKISSESARNHHHHHH---HHHHHaaaaaaxapaaaaa
1s9r_A_1081s9r   A115128RNFLKAKKTSRELVHHHHHT-SSHHHHHaaaaaaxabaaaaa
1si8_A_4291si8   A440453AASLGQVKNQEIIAHHHHTT---HHHHHaaaaaaxaxaaaaa
1v9m_A_1211v9m   A124137WRQAYEAQDPAGMAHHHHHHSSSHHHHHaaaaaapabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ca1_*_1741ca1   *     CDCADMIUM ION D - 174
1ca1_*_1741ca1   *     CDCADMIUM ION F - 175
1ca1_*_1741ca1   *     CDCADMIUM ION D - 178
1ca1_*_1741ca1   *     CDCADMIUM ION L - 180
1ca1_*_1741ca1   *     CDCADMIUM ION K - 181
1cy5_A_371cy5   A     ZNZINC ION I - 37
1cy5_A_371cy5   A     ZNZINC ION E - 40
1cy5_A_371cy5   A     ZNZINC ION E - 41
1cy5_A_371cy5   A     ZNZINC ION K - 42
1cy5_A_371cy5   A     ZNZINC ION N - 45
1cy5_A_371cy5   A     ZNZINC ION Q - 50
1cy5_A_371cy5   A     ZNZINC ION A - 54
1dow_A_1921dow   A     MSESELENOMETHIONINE A - 192
1dow_A_1921dow   A     MSESELENOMETHIONINE K - 193
1dow_A_1921dow   A     MSESELENOMETHIONINE R - 194
1dow_A_1921dow   A     MSESELENOMETHIONINE Q - 195
1dow_A_1921dow   A     MSESELENOMETHIONINE L - 198
1dow_A_1921dow   A     MSESELENOMETHIONINE G - 202
1dow_A_1921dow   A     MSESELENOMETHIONINE N - 203
1dow_A_1921dow   A     MSESELENOMETHIONINE R - 204
1dow_A_1921dow   A     MSESELENOMETHIONINE D - 205
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID Y - 276
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID F - 288
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID C - 289
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID P - 292
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID Q - 293
1ezf_A_2701ezf   A     IN0N-{2-[TRANS-7-CHLORO-1-(2,2-DIMETHYL-PROPYL) -5-NAPHTHALEN-1-YL-2-OXO-1,2,3,5-TETRAHYDRO-BENZO[E] [1, 4]OXAZEPIN-3-YL]-ACETYL}-ASPARTIC ACID M - 295
1gz3_A_611gz3   A     FUMFUMARIC ACID I - 63
1gz3_A_611gz3   A     FUMFUMARIC ACID Q - 64
1gz3_A_611gz3   A     FUMFUMARIC ACID A - 65
1gz3_A_611gz3   A     FUMFUMARIC ACID R - 67
1gz3_A_611gz3   A     FUMFUMARIC ACID F - 68
1gz3_A_611gz3   A     FUMFUMARIC ACID Y - 84
1gz3_A_611gz3   A     FUMFUMARIC ACID G - 87
1gz3_A_611gz3   A     FUMFUMARIC ACID I - 88
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER H - 2671
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER N - 2672
1js8_A_26461js8   A     CUOCU2-O2 CLUSTER H - 2675
1k87_A_1611k87   A     1PEPENTAETHYLENE GLYCOL E - 170
1k87_A_1611k87   A     1PEPENTAETHYLENE GLYCOL R - 174
1mzg_A_71mzg   A     MSESELENOMETHIONINE K - 7
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 10
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 11
1mzg_A_71mzg   A     MSESELENOMETHIONINE F - 14
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 15
1mzg_A_71mzg   A     MSESELENOMETHIONINE W - 20
1mzg_A_71mzg   A     MSESELENOMETHIONINE K - 23
1mzg_A_71mzg   A     MSESELENOMETHIONINE I - 27
1nvu_S_8191nvu   S     PO4PHOSPHATE ION L - 822
1nvu_S_8191nvu   S     PO4PHOSPHATE ION R - 826
1o0s_A_751o0s   A     TTNTARTRONATE Q - 77
1o0s_A_751o0s   A     TTNTARTRONATE Q - 78
1o0s_A_751o0s   A     TTNTARTRONATE A - 79
1o0s_A_751o0s   A     TTNTARTRONATE R - 81
1o0s_A_751o0s   A     TTNTARTRONATE V - 82
1o0s_A_751o0s   A     TTNTARTRONATE K - 85
1o0s_A_751o0s   A     TTNTARTRONATE Q - 98
1o0s_A_751o0s   A     TTNTARTRONATE L - 102
1o0s_A_751o0s   A     TTNTARTRONATE R - 105
1qls_A_461qls   A     CACALCIUM ION L - 65
1qr0_A_261qr0   A     COACOENZYME A K - 28
1qr0_A_261qr0   A     COACOENZYME A K - 31
1qr0_A_261qr0   A     COACOENZYME A F - 35
1qr0_A_261qr0   A     COACOENZYME A R - 43
1qr0_A_261qr0   A     COACOENZYME A T - 44
1qr0_A_261qr0   A     COACOENZYME A L - 45
1qr0_A_261qr0   A     COACOENZYME A G - 47
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ca1_*_1741ca1   * CD7CD FROM CRYSTALLISATION BUFFER AT PROTEIN SURFACE.D - 174
1ca1_*_1741ca1   * CD7CD FROM CRYSTALLISATION BUFFER AT PROTEIN SURFACE.D - 178
1gz3_A_611gz3   A AC4FUM BINDING SITE FOR CHAIN AQ - 64
1gz3_A_611gz3   A AC4FUM BINDING SITE FOR CHAIN AR - 67

Clusters included in this Subclass
CLUSTER: HH.2.233
CLUSTER: HH.2.71
CLUSTER: HH.3.130
CLUSTER: HH.3.50
CLUSTER: HH.4.227
CLUSTER: HH.4.33
CLUSTER: HH.4.50
CLUSTER: HH.5.45
CLUSTER: HH.6.144