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Information on SUBCLASS 3.5.5
Subclass Accession number: 4708
Subclass: 3.5.5 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 17.1 +/- 16.8
Average RMSD (Å) : 0.883 +/- 0.172

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XchpDXX
(φψ)-conformation: aapabaa
Pattern: [ADEKNQ][AEKR][dewy][ALV][degs][DGKNR][ACILT][dhkt][DT]x[dgsv][ADEK][eksy][KLV][DN][knry]
Conservation:-0.2170.340-0.6790.660-0.615-0.185-0.304-0.6962.231-1.238-0.8680.278-0.5880.3422.177-0.638
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ddz_A_2381ddz   A238253AKYLDKCKDGDEELNRHHHHTT-SSHHHHHHHaaaaaapabaaaaaaa
1ddz_A_4921ddz   A492507QAELSRITDPKDSLNRHHHHTT--SHHHHHHHaaaaaabaxaaaaaaa
1f80_D_561f80   D5671DEDAEKIATVGDAVNYHHHHHH--BHHHHHHHaaaaaaxabaaaaaaa
1iu4_A_1191iu4   A134149NRALENAHDESAYLDNHHTTTT-SSHHHHHHHaaaaaababaaaaaaa
1mx1_A_13961mx1   A14011416EKYLGGTDDTVKKKDLHHHHTT---HHHHHHHaaaaaabaxaaaaaaa
1poi_A_2721poi   A280295KEWVFDLKDHDEYLNKHHHTTT-SSHHHHHHHaaaaaaxabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE D - 56
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE E - 57
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE D - 58
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE A - 59
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE E - 60
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE K - 61
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE I - 62
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE A - 63
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE T - 64
1f80_D_561f80   D     PN24'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE A - 68
1mx1_A_13961mx1   A     THATACRINE M - 1425

Clusters included in this Subclass
CLUSTER: HH.4.203
CLUSTER: HH.5.310
CLUSTER: HH.6.266