ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.5.8

Subclass Accession number: 4711
Subclass: 3.5.8

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 87.0 +/- -63.5
Average RMSD (Å) : 0.100 +/- 0.000

Consensus geometry

d (Å): 17

delta (°): 45-90

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	LNVTTcA
(φψ)-conformation:	aapabaa

Pattern:	[T]	[FIL]	[F]	[G]	[LT]	[S]	[S]	[L]	[N]	[V]	[T]	[T]	[DN]	[A]	[Q]	[A]	[R]	[AE]	[Y]	[F]	[K]	[Q]	[S]
Conservation:	0.382	-1.809	1.112	1.112	-2.003	-0.348	-0.348	-0.348	1.112	-0.348	0.382	0.382	-0.706	-0.348	0.382	-0.348	0.382	-2.003	1.842	1.112	0.382	0.382	-0.348

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1crl_*_343	1crl	-	343	365	TFFGTSSLNVTTDAQAREYFKQS	HHHHGGGTT--SHHHHHHHHHHH	aaaaaaaaaxabaaaaaaaaaaa
1gz7_A_343	1gz7	A	343	365	TLFGLSSLNVTTDAQARAYFKQS	HHHHGGGTT--SHHHHHHHHHHH	aaaaaaaaaxabaaaaaaaaaaa
1llf_A_343	1llf	A	343	365	TIFGLSSLNVTTNAQARAYFKQS	HHHHGGGTT--SHHHHHHHHHHH	aaaaaaaaaxabaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1crl_*_343	1crl	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 351
1crl_*_343	1crl	*	NAGN-ACETYL-D-GLUCOSAMINE	V - 352
1crl_*_343	1crl	*	NAGN-ACETYL-D-GLUCOSAMINE	T - 353
1crl_*_343	1crl	*	NAGN-ACETYL-D-GLUCOSAMINE	Q - 357
1crl_*_343	1crl	*	NAGN-ACETYL-D-GLUCOSAMINE	Q - 364
1gz7_A_343	1gz7	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 348
1gz7_A_343	1gz7	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 349
1llf_A_343	1llf	A	F23TRICOSANOIC ACID	I - 344
1llf_A_343	1llf	A	F23TRICOSANOIC ACID	F - 345
1llf_A_343	1llf	A	F23TRICOSANOIC ACID	S - 349
1llf_A_343	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 354
1llf_A_343	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 358
1llf_A_343	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 360
1llf_A_343	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 361
1llf_A_343	1llf	A	F23TRICOSANOIC ACID	Y - 361
1llf_A_343	1llf	A	F23TRICOSANOIC ACID	F - 362
1llf_A_343	1llf	A	F23TRICOSANOIC ACID	S - 365

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gz7_A_343	1gz7	A	AC1NAG BINDING SITE FOR CHAIN A	N - 351

Clusters included in this Subclass

CLUSTER: HH.7.63