Logo
Information on SUBCLASS 3.6.2
Subclass Accession number: 4715
Subclass: 3.6.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 13.7 +/- 17.3
Average RMSD (Å) : 0.892 +/- 0.219

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXXXcXX
(φψ)-conformation: aabapaa
Pattern: [filtv]x[adgqrs]xx[eknps][DKNST]x[ADEQ]x[ACFILV]x[adeknqrt][afiktv]x
Conservation:0.746-0.218-0.668-0.347-0.379-0.3542.725-1.2511.337-0.5280.720-0.329-0.257-0.381-0.816
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cc1_L_1441cc1   L144158LTDRIKDGAKADATNHHHH--SHHHHHHHHaaaaxaxaaaaaaaa
1d5r_A_1291d5r   A141155HRGKFLKAQEALDFYHHTS-SSHHHHHHHHaagababaaaaaaaa
1e6y_A_13061e6y   A13061320TSRVSEDPAKIALEVHHHH---HHHHHHHHaaaabaxaaaaaaaa
1h6t_A_441h6t   A4458IKQIFSDDAFAETIKHHHH--SHHHHHHHHaaaabaxaaaaaaaa
1h6u_A_441h6u   A4458INVIFPDPALANAIKHHHH--SHHHHHHHHaaaabwxaaaaaaaa
1hnn_A_1841hnn   A184198LEAVSPDLASFQRALHHHH-SSHHHHHHHHaaaababaaaaaaaa
1jf0_A_1321jf0   A141155ISGISPSEEDCEKTFHHSS---HHHHHHHHaavabwxaaaaaaaa
1qho_A_3331qho   A333347FLSVNSNKANLHQALHHHH---HHHHHHHHaaaabaxaaaaaaaa
1qv0_A_1321qv0   A141155ISGISPSQEDCEATFHHSS---HHHHHHHHaavabaxaaaaaaaa
1r6t_A_4031r6t   A403417LTFFLEDDDKLEQIRHHHH---HHHHHHHHaaaaxaxaaaaaaaa
2pva_A_1052pva   A109123VLGNCVTVDDVIEKLHHHH--SHHHHHHHHaaaababaaaaaaaa
7taa_*_3017taa   -301315FASYTNDIALAKNVAHHHH---HHHHHHHHaaaabaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID G - 129
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID R - 130
1d5r_A_1291d5r   A     TARD(-)-TARTARIC ACID T - 131
1hnn_A_1841hnn   A     SKF1,2,3,4-TETRAHYDRO-ISOQUINOLINE-7-SULFONIC ACID AMIDE E - 185
1hnn_A_1841hnn   A     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 186
1hnn_A_1841hnn   A     SKF1,2,3,4-TETRAHYDRO-ISOQUINOLINE-7-SULFONIC ACID AMIDE A - 186
1hnn_A_1841hnn   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 187
1jf0_A_1321jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE W - 135
1jf0_A_1321jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE Y - 138
1jf0_A_1321jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE S - 142
1jf0_A_1321jf0   A     CZHC2-HYDROPEROXY-COELENTERAZINE I - 144
1qv0_A_1321qv0   A     GOLGLYCEROL G - 143
1qv0_A_1321qv0   A     GOLGLYCEROL I - 144
1qv0_A_1321qv0   A     GOLGLYCEROL S - 145
1qv0_A_1321qv0   A     GOLGLYCEROL P - 146
1r6t_A_4031r6t   A     MSESELENOMETHIONINE L - 403
1r6t_A_4031r6t   A     MSESELENOMETHIONINE T - 404
1r6t_A_4031r6t   A     MSESELENOMETHIONINE F - 405
1r6t_A_4031r6t   A     MSESELENOMETHIONINE F - 406
1r6t_A_4031r6t   A     MSESELENOMETHIONINE Q - 415
1r6t_A_4031r6t   A     MSESELENOMETHIONINE I - 416
1r6t_A_4031r6t   A     MSESELENOMETHIONINE D - 419
1r6t_A_4031r6t   A     MSESELENOMETHIONINE Y - 420
1r6t_A_4031r6t   A     MSESELENOMETHIONINE T - 421
1r6t_A_4031r6t   A     MSESELENOMETHIONINE S - 422

Clusters included in this Subclass
CLUSTER: HH.4.45