ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.6.3

Subclass Accession number: 4716
Subclass: 3.6.3

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 22.6 +/- 22.1
Average RMSD (Å) : 0.586 +/- 0.308

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	pXppDhX
(φψ)-conformation:	aabapaa

Pattern:	x	[ALT]	x	x	x	[ael]	[mqr]	[alv]	[agr]	[LM]	[ENRT]	[efkqr]	[ST]	[DKNQS]	[DQ]	[lp]	[AEKQ]	[efkqr]	[ILV]	[aeq]	[eknpqr]	[ilvy]	[FKLV]
Conservation:	-0.595	0.004	-0.587	-1.226	-1.149	-0.373	-0.142	-0.264	-0.680	1.861	0.175	-0.786	1.744	0.205	2.565	-0.091	0.001	-0.761	1.660	-0.192	-0.528	-0.440	-0.398

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a6q_*_247	1a6q	-	249	271	ELCDFVRSRLEVTDDLEKVCNEV	HHHHHHHHHHTT---HHHHHHHH	aaaaaaaaaaaabaxaaaaaaaa
1gqi_A_477	1gqi	A	478	500	ATAADEWLRMTFSNQPAFIEPVK	HHHHHHHHHHHT---HHHHHHHH	aaaaaaaaaaaabaxaaaaaaaa
1nns_A_299	1nns	A	301	323	KARVLLQLALTQTKDPQQIQQIF	HHHHHHHHHTTT---HHHHHHHH	aaaaaaaaaaaabaxaaaaaaaa
1o7j_A_300	1o7j	A	302	324	HARILLMLALTRTSDPKVIQEYF	HHHHHHHHHTTT---HHHHHHHH	aaaaaaaaaaaabaxaaaaaaaa
1v9m_A_146	1v9m	A	146	168	PLARALRAVLRETQDLARVEALL	HHHHHHHHHHTT---HHHHHHHH	aaaaaaaaaaaabaxaaaaaaaa
2liv_*_276	2liv	-	282	304	AALQSLQAGLNQSDDPAEIAKYL	HHHHHHHHHHTT-S-HHHHHHHH	aaaaaaaaaaaabaxaaaaaaaa
4pga_A_310	4pga	A	312	334	KARILAMVAMTKTQDSKELQRIF	HHHHHHHHHTTT---HHHHHHHH	aaaaaaaaaaaabaxaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gqi_A_477	1gqi	A	EDO1,2-ETHANEDIOL	E - 483
1gqi_A_477	1gqi	A	COCOBALT (II) ION	P - 498
1gqi_A_477	1gqi	A	COCOBALT (II) ION	Q - 501
1gqi_A_477	1gqi	A	COCOBALT (II) ION	M - 502
1gqi_A_477	1gqi	A	COCOBALT (II) ION	V - 505
1o7j_A_300	1o7j	A	GOLGLYCEROL	R - 304
1o7j_A_300	1o7j	A	GOLGLYCEROL	M - 308
1o7j_A_300	1o7j	A	EDO1,2-ETHANEDIOL	L - 311
1o7j_A_300	1o7j	A	EDO1,2-ETHANEDIOL	S - 315
1v9m_A_146	1v9m	A	GOLGLYCEROL	P - 146
1v9m_A_146	1v9m	A	GOLGLYCEROL	R - 149
1v9m_A_146	1v9m	A	GOLGLYCEROL	D - 175

Clusters included in this Subclass

CLUSTER: HH.5.309

CLUSTER: HH.6.43