Information on SUBCLASS 3.8.3 |
Subclass Accession number: 4725
Subclass: 3.8.3 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005216 (>75 %) GO:0005244 (>75 %) GO:0005253 (>75 %) GO:0005254 (>75 %) GO:0008509 (>75 %) GO:0015075 (>75 %) GO:0015267 (>75 %) GO:0015268 (>75 %) SCOP : 47615 (>75 %) 47616 (>75 %) 47617 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 22.2 +/- 38.5 Average RMSD (Å) : 0.800 +/- 0.216 Consensus geometry
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Consensus Sequence: | XpXXppX |
(φψ)-conformation: | aapppaa |
Pattern: | [ae] | [aet] | [afy] | x | x | [hnt] | [cqr] | [kp] | [ds] | [dqs] | x | x | [ily] | [egt] | x |
Conservation: | 0.546 | -0.381 | 0.286 | -0.648 | -1.048 | 0.552 | -0.514 | 2.072 | 1.955 | 0.286 | -0.514 | -1.181 | 0.286 | -0.915 | -0.781 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bo4_A_54 | 1bo4 | A | 55 | 69 | ATYSQHQPDSDYLGN | HHHHSS---HHHHHH | aaaaaaxwxaaaaaa |
1k0m_A_217 | 1k0m | A | 217 | 231 | EEFASTCPDDEEIEL | HHHHTTS--HHHHHH | aaaaaaxwxaaaaaa |
1r4p_A_278 | 1r4p | A | 281 | 295 | AAAFLNRKSQFLYTT | HHHHS----HHHHHH | aaaaaaxxpaaaaaa |
1rk4_A_217 | 1rk4 | A | 217 | 231 | EEFASTCPDDEEIEL | HHHHTT---HHHHHH | aaaaaaxxxaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bo4_A_54 | 1bo4 | A | SPDSPERMIDINE | Y - 57 |
1r4p_A_278 | 1r4p | A | FMTFORMIC ACID | S - 278 |
1r4p_A_278 | 1r4p | A | FMTFORMIC ACID | N - 279 |
1r4p_A_278 | 1r4p | A | EDO1,2-ETHANEDIOL | K - 288 |
1r4p_A_278 | 1r4p | A | EDO1,2-ETHANEDIOL | F - 291 |
1r4p_A_278 | 1r4p | A | EDO1,2-ETHANEDIOL | L - 292 |
1r4p_A_278 | 1r4p | A | EDO1,2-ETHANEDIOL | Y - 293 |
1r4p_A_278 | 1r4p | A | FMTFORMIC ACID | T - 294 |
1r4p_A_278 | 1r4p | A | EDO1,2-ETHANEDIOL | T - 295 |
Clusters included in this Subclass |
CLUSTER: HH.6.139 |