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Information on SUBCLASS 3.8.4
Subclass Accession number: 4726
Subclass: 3.8.4 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004108 (>50 %)  GO:0016746 (>50 %)  GO:0046912 (>50 %)  
SCOP : 48255 (>50 %)  48256 (>50 %)  48257 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 15.3 +/- 17.0
Average RMSD (Å) : 0.667 +/- 0.153

Consensus geometry
d (Å): 17 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: pRXXXXp
(φψ)-conformation: aapppaa
Pattern: [ES][AE][AL][EKR][ANV][FW]xx[EFY]x[AGR][DKS][HST][R][GKS]x[DPT][AEK][EN][VY][IK][AEG][AIW][ILM]
Conservation:0.4990.327-0.0320.547-1.1322.338-0.737-1.034-0.145-1.034-0.638-0.243-0.2432.917-0.441-0.325-0.342-0.3421.0310.323-0.364-0.638-1.0340.744
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a59_*_601a59   -6184SELKAFVNFERSHRKLDENVKGAIHHHHHHHHHHHTS-S--HHHHHHHaaaaaaaaaaaaaapxxaaaaaaa
1aj8_A_611aj8   A6285SELENFKKELAKSRGLPKEVIEIMHHHHHHHHHHHTT----HHHHHHHaaaaaaaaaaaaaaxbwaaaaaaa
1xva_A_251xva   A2548EAARVWQLYIGDTRSRTAEYKAWLHHHHHHHHHHHTT--B-HHHHHHHaaaaaaaaaaaaaabxxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1xva_A_251xva   A     ACTACETATE ION W - 30
1xva_A_251xva   A     SAMS-ADENOSYLMETHIONINE Y - 33
1xva_A_251xva   A     ACTACETATE ION Y - 33
1xva_A_251xva   A     SAMS-ADENOSYLMETHIONINE I - 34
1xva_A_251xva   A     ACTACETATE ION I - 34
1xva_A_251xva   A     SAMS-ADENOSYLMETHIONINE T - 37
1xva_A_251xva   A     SAMS-ADENOSYLMETHIONINE R - 38
1xva_A_251xva   A     SAMS-ADENOSYLMETHIONINE Y - 44

Clusters included in this Subclass
CLUSTER: HH.5.299