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Information on SUBCLASS 3.11.1
Subclass Accession number: 4738
Subclass: 3.11.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 12.3 +/- 14.8
Average RMSD (Å) : 0.738 +/- 0.267

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXXcppp
(φψ)-conformation: aaplbaa
Pattern: [ADGR]x[ily]xxx[afilt]x[DGN][CDENY][EKQRY][aekrs]xxxx
Conservation:0.208-0.1451.0950.463-0.870-0.991-0.472-0.8582.5700.1751.3950.121-0.669-0.160-0.823-1.038
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4m_A_651a4m   A6681DYYMPVIAGCREAIKRHHHHHHHTT-HHHHHHaaaaaaapvbaaaaaa
1b80_A_2481b80   A248263ACEWQSFVNNQSKLVDHHHHHHTTT-HHHHHHaaaaaaaxvbaaaaaa
1duw_A_1971duw   A202217ASLMERIKGDKLAEAFHHHHHHHTT-HHHHHHaaaaaaapvxaaaaaa
1jdh_A_2911jdh   A299314DCLQILAYGNQESKLIHHHHHHHTT-HHHHHHaaaaaaapvbaaaaaa
1jdh_A_4141jdh   A422437GILSNLTCNNYKNKMMHHHHHHTTT-HHHHHHaaaaaaaxlbaaaaaa
1mn2_*_2521mn2   -252267ACIWQGFVNEQAFMAAHHHHHHTTT-HHHHHHaaaaaaapvbaaaaaa
1n4k_A_5471n4k   A558573RVLRHSQQDYRKNQEYHHHHHHHTT-HHHHHHaaaaaaaplbaaaaaa
1qtm_A_4021qtm   A414429ANLWGRLEGEERLLWLHHHHHHTTT-HHHHHHaaaaaaapgxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a4m_A_651a4m   A     PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE F - 65
1a4m_A_651a4m   A     PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE M - 69
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE E - 250
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE F - 254
1b80_A_2481b80   A     CACALCIUM ION F - 254
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE K - 260
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE L - 261
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE D - 264
1b80_A_2481b80   A     CACALCIUM ION D - 264
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE F - 265
1b80_A_2481b80   A     CACALCIUM ION F - 265
1b80_A_2481b80   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 265
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE Q - 266
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE F - 267
1b80_A_2481b80   A     HTRBETA-HYDROXYTRYPTOPHANE I - 268
1b80_A_2481b80   A     CACALCIUM ION I - 268
1b80_A_2481b80   A     CACALCIUM ION F - 269
1b80_A_2481b80   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 269
1b80_A_2481b80   A     CACALCIUM ION L - 272
1b80_A_2481b80   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 272
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 197
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 199
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 200
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 201
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 203
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 204
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 205
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 207
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 208
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 211
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 212
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 213
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 214
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 216
1duw_A_1971duw   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 217
1mn2_*_2521mn2   *     CACALCIUM ION M - 273
1mn2_*_2521mn2   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 273
1mn2_*_2521mn2   *     CACALCIUM ION L - 276
1mn2_*_2521mn2   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 276
1n4k_A_5471n4k   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE Y - 567
1n4k_A_5471n4k   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE R - 568
1n4k_A_5471n4k   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE K - 569

Clusters included in this Subclass
CLUSTER: HH.2.220
CLUSTER: HH.3.122