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Information on SUBCLASS 3.12.1
Subclass Accession number: 4741
Subclass: 3.12.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 13.0 +/- 14.8
Average RMSD (Å) : 0.745 +/- 0.284

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XpXXphp
(φψ)-conformation: aababaa
Pattern: [afglv][fgklm][adegn]x[fhilvy][dekprt][dgrst][afgpv][adest][deqst]x[ailtv]
Conservation:-0.934-0.349-0.539-0.3560.508-1.4671.154-1.3621.6410.7390.1030.862
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b63_A_81b63   A1627AGEVVERPASVVHHHH-SSHHHHHaaaababaaaaa
1e6y_A_14091e6y   A14111422ALEDHFGGSQRAHHHHT-SHHHHHaaaaxaxaaaaa
1itw_A_7201itw   A724735SKAMRPSATFNAHHHH---HHHHHaaaabaxaaaaa
1kea_A_501kea   A6071FFVKYKCFEDILHHHH--SHHHHHaaaababaaaaa
1mun_*_451mun   -5566FMARFPTVTDLAHHHH-SSHHHHHaaaababaaaaa
1n7k_A_41n7k   A1122GLDRLGSPEDLAHHHH--SHHHHHaaaababaaaaa
1n8q_A_6281n8q   A648659VFLYYKSDDTLRHHHH-SSHHHHHaaaababaaaaa
1ngn_A_4451ngn   A455466FLEKYPSAEVARHHHHS-SHHHHHaaaababaaaaa
1orn_A_451orn   A5566LFEKYRTPHDYIHHHH--SHHHHHaaaababaaaaa
1qor_A_2661qor   A266277LQGYITTREELTHHHH--SHHHHHaaaababaaaaa
2liv_*_2762liv   -290301GLNQSDDPAEIAHHTT-S-HHHHHaaaabaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b63_A_81b63   A     EDO1,2-ETHANEDIOL K - 28
1b63_A_81b63   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 29
1b63_A_81b63   A     MGMAGNESIUM ION E - 29
1b63_A_81b63   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 30
1b63_A_81b63   A     EDO1,2-ETHANEDIOL E - 32
1b63_A_81b63   A     MGMAGNESIUM ION E - 32
1b63_A_81b63   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 33
1b63_A_81b63   A     MGMAGNESIUM ION N - 33
1b63_A_81b63   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 34
1b63_A_81b63   A     EDO1,2-ETHANEDIOL L - 35
1b63_A_81b63   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 36
1b63_A_81b63   A     MGMAGNESIUM ION D - 36
1e6y_A_14091e6y   A     F43FACTOR 430 F - 1416
1e6y_A_14091e6y   A     F43FACTOR 430 G - 1417
1e6y_A_14091e6y   A     F43FACTOR 430 G - 1418
1e6y_A_14091e6y   A     F43FACTOR 430 S - 1419
1e6y_A_14091e6y   A     F43FACTOR 430 Q - 1420
1e6y_A_14091e6y   A     GOLGLYCEROL T - 1437
1kea_A_501kea   A     ZNZINC ION K - 65
1kea_A_501kea   A     ZNZINC ION C - 66
1kea_A_501kea   A     ACTACETATE ION C - 66
1kea_A_501kea   A     ZNZINC ION F - 67
1kea_A_501kea   A     ZNZINC ION E - 68
1kea_A_501kea   A     ACTACETATE ION E - 68
1kea_A_501kea   A     ZNZINC ION D - 69
1mun_*_451mun   *     IMDIMIDAZOLE V - 45
1mun_*_451mun   *     GOLGLYCEROL R - 58
1mun_*_451mun   *     GOLGLYCEROL F - 59
1mun_*_451mun   *     GOLGLYCEROL T - 63
1mun_*_451mun   *     GOLGLYCEROL D - 64
1mun_*_451mun   *     GOLGLYCEROL L - 65
1mun_*_451mun   *     GOLGLYCEROL N - 67
1orn_A_451orn   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE D - 45
1orn_A_451orn   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE A - 46
1qor_A_2661qor   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 266
1qor_A_2661qor   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 267
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e6y_A_14091e6y   A AC1F43 BINDING SITE FOR CHAIN DG - 1417

Clusters included in this Subclass
CLUSTER: HH.4.60