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Information on SUBCLASS 3.20.1
Subclass Accession number: 4752
Subclass: 3.20.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 62.4 +/- 13.2
Average RMSD (Å) : 0.225 +/- 0.050

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: WYhpGXp
(φψ)-conformation: aapbeaa
Pattern: [TV][AIKV]x[FLV][L][N][HKR][Q][V][A][DN][LW][NSV][V][FL][FTY][TV][K][IL][H][NQ][FIY][H][W][NY][MV][KNRT][G][HP][HNQ][F][F][T][L][H][E][K][FM][DE][DE][FL][Y][NST][E]x[AGS][EGT][HQY][IM][D][ET][ILV][A][E][R][ILV][L][AS]
Conservation:-0.731-1.543-1.046-1.0700.1221.091-0.7460.6070.1220.122-0.035-0.066-1.3760.122-0.653-0.861-0.7130.607-0.3442.060-0.385-0.6122.0603.513-0.530-0.498-1.1791.091-0.443-0.6461.0911.0910.6070.1222.0600.6070.607-0.385-0.014-0.014-0.6451.576-0.7890.607-1.363-0.895-1.480-0.531-0.4981.091-0.752-0.5450.1220.6070.607-0.4970.122-0.557
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ji5_A_51ji5   A562VIEVLNKQVADWSVLFTKLHNFHWYVKGPQFFTLHEKFEELYTESATHIDEIAERILAHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaaaaaaaxbeaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
1jig_A_41jig   A764VVEVLNKQVANWNVLYVKLHNYHWYVTGPHFFTLHEKFEEFYNEAGTYIDELAERILAHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaaaaaaaxbeaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
1n1q_A_41n1q   A966VAVLLNRQVANWVVLYVKLHNFHWNVNGPNFFTLHEKFEELYTEASGHIDTLAERVLSHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaaaaaaaxbeaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
1qgh_A_91qgh   A966TKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaaaaaaaaaaapbeaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ji5_A_51ji5   A     MPD2-METHYL-2,4-PENTANEDIOL V - 13
1ji5_A_51ji5   A     MPD2-METHYL-2,4-PENTANEDIOL W - 16
1ji5_A_51ji5   A     MPD2-METHYL-2,4-PENTANEDIOL S - 17
1ji5_A_51ji5   A     MPD2-METHYL-2,4-PENTANEDIOL V - 18
1ji5_A_51ji5   A     MPD2-METHYL-2,4-PENTANEDIOL F - 20
1ji5_A_51ji5   A     MPD2-METHYL-2,4-PENTANEDIOL T - 21
1ji5_A_51ji5   A     OF3FERRIC ION, 1 WATER COORDINATED H - 27
1ji5_A_51ji5   A     OF3FERRIC ION, 1 WATER COORDINATED W - 28
1ji5_A_51ji5   A     OF3FERRIC ION, 1 WATER COORDINATED H - 39
1ji5_A_51ji5   A     OF3FERRIC ION, 1 WATER COORDINATED E - 43
1ji5_A_51ji5   A     OF3FERRIC ION, 1 WATER COORDINATED Y - 46
1ji5_A_51ji5   A     MPD2-METHYL-2,4-PENTANEDIOL I - 53
1ji5_A_51ji5   A     OF3FERRIC ION, 1 WATER COORDINATED D - 54
1ji5_A_51ji5   A     OF3FERRIC ION, 1 WATER COORDINATED E - 58
1jig_A_41jig   A     OF3FERRIC ION, 1 WATER COORDINATED H - 29
1jig_A_41jig   A     OF3FERRIC ION, 1 WATER COORDINATED W - 30
1jig_A_41jig   A     OF3FERRIC ION, 1 WATER COORDINATED H - 41
1jig_A_41jig   A     OF3FERRIC ION, 1 WATER COORDINATED E - 42
1jig_A_41jig   A     OF3FERRIC ION, 1 WATER COORDINATED E - 45
1jig_A_41jig   A     OF3FERRIC ION, 1 WATER COORDINATED Y - 48
1jig_A_41jig   A     OF3FERRIC ION, 1 WATER COORDINATED D - 56
1jig_A_41jig   A     OF3FERRIC ION, 1 WATER COORDINATED E - 60
1n1q_A_41n1q   A     FEOMU-OXO-DIIRON H - 28
1n1q_A_41n1q   A     FEOMU-OXO-DIIRON H - 31
1n1q_A_41n1q   A     FEOMU-OXO-DIIRON W - 32
1n1q_A_41n1q   A     FEOMU-OXO-DIIRON H - 43
1n1q_A_41n1q   A     FEOMU-OXO-DIIRON E - 47
1n1q_A_41n1q   A     FEOMU-OXO-DIIRON Y - 50
1n1q_A_41n1q   A     FEOMU-OXO-DIIRON D - 58
1n1q_A_41n1q   A     FEOMU-OXO-DIIRON E - 62
1qgh_A_91qgh   A     FEFE (III) ION H - 28
1qgh_A_91qgh   A     FEFE (III) ION H - 31
1qgh_A_91qgh   A     FEFE (III) ION W - 32
1qgh_A_91qgh   A     FEFE (III) ION H - 43
1qgh_A_91qgh   A     FEFE (III) ION D - 47
1qgh_A_91qgh   A     FEFE (III) ION D - 58
1qgh_A_91qgh   A     FEFE (III) ION E - 62
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1qgh_A_91qgh   A ASAIRON-BINDING SITEH - 31
1qgh_A_91qgh   A ASAIRON-BINDING SITEH - 43
1qgh_A_91qgh   A ASAIRON-BINDING SITED - 47
1qgh_A_91qgh   A ASAIRON-BINDING SITED - 58
1qgh_A_91qgh   A ASAIRON-BINDING SITEE - 62

Clusters included in this Subclass
CLUSTER: HH.4.120