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Information on SUBCLASS 4.1.2
Subclass Accession number: 4771
Subclass: 4.1.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 24

Average sequence ID (%) : 12.1 +/- 16.6
Average RMSD (Å) : 0.733 +/- 0.250

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXXhpXX
(φψ)-conformation: aalabpaa
Pattern: xx[aflvy]xx[egnr]xx[adenpqst]xx[adegqrst][afilmvwy]xx[afiklmtv]x
Conservation:-0.079-0.8510.738-0.338-0.7192.633-0.7251.0980.792-1.115-0.8660.0210.890-1.127-0.6340.533-0.250
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1brw_A_181brw   A2642RGYTNGDIPDYQMSALAHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1c1k_A_1461c1k   A149165KLLQSNIISFETFILLDHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1cgt_*_2831cgt   -291307NVFRDNTSNMYALDSMIHHHTS-SS-HHHHHHHHaaaaavabbaaaaaaaa
1ciu_*_2841ciu   -292308QVFRDNTDTMYGLDSMIHHHTT-SS-HHHHHHHHaaaaalabbaaaaaaaa
1dqs_A_2871dqs   A301317LARHLGILKGVAVSRIVHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1e2h_A_1711e2h   A175191ARYLMGSMTPQAVLAFVHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1e2h_A_961e2h   A105121HRLDQGEISAGDAAVVMHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1ek9_A_3601ek9   A360376AGYSVGTRTIVDVLDATHHHHTTSS-HHHHHHHHaaaaavabbaaaaaaaa
1h5r_A_2541h5r   A257273IAFRKGFIDVEQVRKLAHHHHTTSS-HHHHHHHHaaaaavabbaaaaaaaa
1h6k_A_1211h6k   A133149DLVNCHVIAAPSMVAMFHHHHTTSB-HHHHHHHHaaaaavabxaaaaaaaa
1iin_A_2541iin   A257273IAFRKNFINAQQVIELAHHHHTTSS-HHHHHHHHaaaaalabbaaaaaaaa
1j0h_A_3771j0h   A385401RFFAKEEISARQFANQMHHHTS--S-HHHHHHHHaaaaalabxaaaaaaaa
1j97_A_321j97   A4056KEAMEGKLNFEQSLRKRHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1ji2_A_3741ji2   A382398RFFATGEIHAERFDAELHHHTS--S-HHHHHHHHaaaaavabxaaaaaaaa
1kcl_A_2831kcl   A291307QVFRDNTDNMYGLKAMLHHHTS-SS-HHHHHHHHaaaaalabbaaaaaaaa
1l8a_A_8451l8a   A855871ELAKRGEIDKKVVADAIHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1oe0_A_1141oe0   A117133NMRRNGSLEQGMYNTLEHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1p5z_B_1371p5z   B140156NLYESECMNETEWTIYQHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1p6x_A_731p6x   A8298NRKQQGNLAVDDAALITHHHHHTSS-HHHHHHHHaaaaagabxaaaaaaaa
1pam_A_2831pam   A291307QVFRDNTDNMYGLKAMLHHHTT-SS-HHHHHHHHaaaaalabbaaaaaaaa
1q5n_A_201q5n   A3753AQAQVGVIPQSAATVIQHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
1qho_A_2841qho   A292308NVFGTFTQTMYDLNNMVHHHTS-SS-HHHHHHHHaaaaavabbaaaaaaaa
1uou_A_511uou   A5975AAVVNGSAQGAQIGAMLHHHHHT-S-HHHHHHHHaaaaagaxxaaaaaaaa
1uw4_B_8651uw4   B877893ELYNYRMVESAVIFRTLHHHHTTSS-HHHHHHHHaaaaavabxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1brw_A_181brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID I - 45
1brw_A_181brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 46
1brw_A_181brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID F - 47
1brw_A_181brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID R - 48
1dqs_A_2871dqs   A     ZNZINC ION H - 287
1dqs_A_2871dqs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 287
1dqs_A_2871dqs   A     CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID H - 287
1dqs_A_2871dqs   A     ZNZINC ION V - 291
1dqs_A_2871dqs   A     CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID V - 291
1ek9_A_3601ek9   A     MSESELENOMETHIONINE A - 360
1ek9_A_3601ek9   A     MSESELENOMETHIONINE G - 361
1ek9_A_3601ek9   A     MSESELENOMETHIONINE Y - 362
1ek9_A_3601ek9   A     MSESELENOMETHIONINE S - 363
1ek9_A_3601ek9   A     MSESELENOMETHIONINE R - 367
1ek9_A_3601ek9   A     MSESELENOMETHIONINE T - 368
1ek9_A_3601ek9   A     MSESELENOMETHIONINE V - 370
1ek9_A_3601ek9   A     MSESELENOMETHIONINE D - 371
1ek9_A_3601ek9   A     MSESELENOMETHIONINE V - 372
1ek9_A_3601ek9   A     MSESELENOMETHIONINE D - 374
1ek9_A_3601ek9   A     MSESELENOMETHIONINE A - 375
1h5r_A_2541h5r   A     THMTHYMIDINE E - 256
1h5r_A_2541h5r   A     THMTHYMIDINE I - 257
1h5r_A_2541h5r   A     THMTHYMIDINE R - 260
1j97_A_321j97   A     BFDASPARTATE BERYLLIUM TRIFLUORIDE M - 43
1j97_A_321j97   A     MGMAGNESIUM ION M - 43
1j97_A_321j97   A     BFDASPARTATE BERYLLIUM TRIFLUORIDE F - 49
1kcl_A_2831kcl   A     GLCGLUCOSE A - 286
1kcl_A_2831kcl   A     GLCGLUCOSE Q - 287
1kcl_A_2831kcl   A     GLCGLUCOSE R - 290
1kcl_A_2831kcl   A     GLCGLUCOSE Q - 291
1kcl_A_2831kcl   A     GLCGLUCOSE R - 294
1kcl_A_2831kcl   A     GLCGLUCOSE D - 295
1kcl_A_2831kcl   A     MALMALTOSE Y - 301
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE F - 114
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE V - 115
1oe0_A_1141oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE M - 118
1p5z_B_1371p5z   B     AR3CYTARABINE F - 137
1p5z_B_1371p5z   B     AR3CYTARABINE A - 138
1p5z_B_1371p5z   B     AR3CYTARABINE L - 141
1p6x_A_731p6x   A     THMTHYMIDINE I - 74
1p6x_A_731p6x   A     THMTHYMIDINE I - 77
1p6x_A_731p6x   A     THMTHYMIDINE Y - 78
1p6x_A_731p6x   A     THMTHYMIDINE Q - 102
1p6x_A_731p6x   A     THMTHYMIDINE F - 105
1p6x_A_731p6x   A     THMTHYMIDINE T - 106
1p6x_A_731p6x   A     THMTHYMIDINE Y - 109
1qho_A_2841qho   A     ABDACARBOSE DERIVED HEXASACCHARIDE T - 288
1qho_A_2841qho   A     MALMALTOSE Y - 302
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h5r_A_2541h5r   A THMTHM BINDING SITE FOR CHAIN DE - 256

Clusters included in this Subclass
CLUSTER: HH.4.52
CLUSTER: HH.5.13
CLUSTER: HH.6.8