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Information on SUBCLASS 4.7.1
Subclass Accession number: 4793
Subclass: 4.7.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 8.4 +/- 11.6
Average RMSD (Å) : 0.870 +/- 0.211

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXXhpph
(φψ)-conformation: aappppaa
Pattern: xxxxxx[ACLPV][dnst][DEPQRS][acglpwy]xxx
Conservation:-0.476-0.0700.025-0.575-0.596-0.7940.9321.6092.003-1.4350.436-0.822-0.237
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6i_*_961a6i   -99111VHLGTRPDEKQYDHHHHS---HHHHHaaaabxxbaaaaa
1cv8_*_571cv8   -5971QFQFTGLTPREMIHHHH----HHHHHaaaaxxbxaaaaa
1hbn_C_651hbn   C6678IREMVEPIDGAKAHHHHS---HHHHHaaaabxxxaaaaa
1ia9_A_18001ia9   A18041816FRAKHHCNSCCRKHHHH----HHHHHaaaapbxbaaaaa
1iw0_A_961iw0   A96108WRSRITASPAVIDHHHH----HHHHHaaaaxbxxaaaaa
1jms_A_2961jms   A297309EDLVSCVNRPEAEHHHHS-B-HHHHHaaaaxpbxaaaaa
1ouo_A_1951ouo   A196208WNKSYPVDEWECTHHHHS---HHHHHaaaabpxbaaaaa
1rcw_A_1031rcw   A105117ELEAHEPSEAAKAHHHH----HHHHHaaaapxpxaaaaa
1rxw_A_1161rxw   A120132AQAAGRVDEYIVDHHHH----HHHHHaaaaxbxxaaaaa
1vic_A_1931vic   A198210QYVQWAPTQLENLHHHHS---HHHHHaaaaxxxbaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE F - 62
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE T - 63
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE G - 64
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE L - 65
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE T - 66
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE P - 67
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE E - 69
1cv8_*_571cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE M - 70
1hbn_C_651hbn   C     GOLGLYCEROL I - 73
1ia9_A_18001ia9   A     ZNZINC ION H - 1808
1ia9_A_18001ia9   A     ZNZINC ION H - 1809
1ia9_A_18001ia9   A     ZNZINC ION C - 1810
1ia9_A_18001ia9   A     ZNZINC ION N - 1811
1ia9_A_18001ia9   A     ZNZINC ION C - 1814
1ouo_A_1951ouo   A     MSESELENOMETHIONINE A - 195
1ouo_A_1951ouo   A     MSESELENOMETHIONINE W - 196
1ouo_A_1951ouo   A     MSESELENOMETHIONINE N - 197
1ouo_A_1951ouo   A     MSESELENOMETHIONINE K - 198
1rcw_A_1031rcw   A     MSESELENOMETHIONINE K - 118
1rcw_A_1031rcw   A     MSESELENOMETHIONINE V - 119
1rcw_A_1031rcw   A     MSESELENOMETHIONINE A - 120
1rcw_A_1031rcw   A     MSESELENOMETHIONINE T - 121
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a6i_*_961a6i   * TNEEMPTY TETRACYCLINE BINDING TUNNEL.H - 100
1a6i_*_961a6i   * TNEEMPTY TETRACYCLINE BINDING TUNNEL.T - 103
1a6i_*_961a6i   * TNEEMPTY TETRACYCLINE BINDING TUNNEL.Q - 116

Clusters included in this Subclass
CLUSTER: HH.3.102
CLUSTER: HH.5.97