Information on SUBCLASS 4.8.1 |
Subclass Accession number: 4798
Subclass: 4.8.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 18 Average sequence ID (%) : 12.7 +/- 14.4 Average RMSD (Å) : 0.961 +/- 0.305 Consensus geometry
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Consensus Sequence: | XXcXppXp |
(φψ)-conformation: | aalbabaa |
Pattern: | x | x | [afgiklmv] | [efklm] | [deknqrty] | x | x | [AGKNR] | x | [adegknrst] | [DGKNST] | x | [denqrsty] | x | [afiltv] |
Conservation: | -0.882 | -0.303 | -0.188 | 0.046 | 0.505 | -0.552 | -0.717 | 3.099 | -0.672 | -0.190 | 0.909 | -1.003 | -0.017 | -0.233 | 0.196 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a04_A_184 | 1a04 | A | 192 | 206 | KHMLKKMKLKSRVEA | HHHHHHHT--SHHHH | aaaaaaalbabaaaa |
1aih_A_297 | 1aih | A | 298 | 312 | LVLKEILGHSTIEMT | HHHHHHHT-SSHHHH | aaaaaaavxabaaaa |
1b0x_A_929 | 1b0x | A | 929 | 943 | KDNFTAAGYTTLEAV | HHHHHHTT--SHHHH | aaaaaaavxabaaaa |
1ci4_A_28 | 1ci4 | A | 31 | 45 | GKKLEERGFDKAYVV | HHHHHHTT--SHHHH | aaaaaaavxabaaaa |
1d3g_A_365 | 1d3g | A | 375 | 389 | EALLKEQGFGGVTDA | HHHHHHTT-SSHHHH | aaaaaaavxabaaaa |
1eb6_A_37 | 1eb6 | A | 38 | 52 | SKFEEYFKTTDQQTR | HHHHHHHS---HHHH | aaaaaaavbaxaaaa |
1eep_A_352 | 1eep | A | 364 | 378 | MSGMGYLGAATISDL | HHHHHHHT-SSHHHH | aaaaaaavbabaaaa |
1ep3_A_279 | 1ep3 | A | 288 | 302 | PELMDQYRIESLESL | HHHHHHTT-S-HHHH | aaaaaaalbabaaaa |
1f44_A_306 | 1f44 | A | 307 | 321 | PEIMQAGGWTNVNIV | HHHHHHHT---HHHH | aaaaaaavxabaaaa |
1fse_A_40 | 1fse | A | 48 | 62 | SNAMQKLGVKGRSQA | HHHHHHHT-SSHHHH | aaaaaaavbabaaaa |
1h76_A_467 | 1h76 | A | 471 | 485 | GLLYNKINSCKFDQF | HHHHHHH--S-HHHH | aaaaaaalbaxaaaa |
1ile_*_88 | 1ile | - | 93 | 107 | LEVEKKLGLKSKREI | HHHHHHTT--SHHHH | aaaaaaavxabaaaa |
1qh5_A_230 | 1qh5 | A | 230 | 244 | KTVQQHAGETDPVTT | HHHHHHHT-SSHHHH | aaaaaaavbabaaaa |
1r7i_A_336 | 1r7i | A | 339 | 353 | QLSLRILGVKTAQAL | HHHHHHHT--SHHHH | aaaaaaavxabaaaa |
1rzt_A_346 | 1rzt | A | 349 | 363 | AQMWYQQGFRSLEDI | HHHHHHTT--SHHHH | aaaaaaavxabaaaa |
1sek_*_63 | 1sek | - | 67 | 81 | DELLRALALPNDNVT | HHHHHHHT---HHHH | aaaaaaalbabaaaa |
1uum_A_365 | 1uum | A | 375 | 389 | EALLKERGFTTVTDA | HHHHHHTT-SSHHHH | aaaaaaavxabaaaa |
1vk4_A_174 | 1vk4 | A | 175 | 189 | REAETLTGTNDLRES | HHHHHHHS-S-HHHH | aaaaaaavbaxaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ci4_A_28 | 1ci4 | A | MSESELENOMETHIONINE | A - 42 |
1ci4_A_28 | 1ci4 | A | MSESELENOMETHIONINE | Y - 43 |
1ci4_A_28 | 1ci4 | A | MSESELENOMETHIONINE | V - 44 |
1ci4_A_28 | 1ci4 | A | MSESELENOMETHIONINE | L - 46 |
1ile_*_88 | 1ile | * | ZNZINC ION | L - 89 |
1ile_*_88 | 1ile | * | ZNZINC ION | L - 93 |
1qh5_A_230 | 1qh5 | A | GTTGLUTATHIONE | R - 249 |
1qh5_A_230 | 1qh5 | A | GTTGLUTATHIONE | K - 252 |
1qh5_A_230 | 1qh5 | A | GTTGLUTATHIONE | D - 253 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | L - 342 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | R - 343 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | I - 344 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | G - 346 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | V - 347 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | K - 348 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | Q - 364 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | N - 365 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | A - 368 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | M - 369 |
1r7i_A_336 | 1r7i | A | GOLGLYCEROL | L - 372 |
1uum_A_365 | 1uum | A | AFI2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE | P - 365 |
Clusters included in this Subclass |
CLUSTER: HH.3.80 |
CLUSTER: HH.4.41 |
CLUSTER: HH.5.19 |
CLUSTER: HH.5.239 |
CLUSTER: HH.6.75 |