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Information on SUBCLASS 4.8.1
Subclass Accession number: 4798
Subclass: 4.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 18

Average sequence ID (%) : 12.7 +/- 14.4
Average RMSD (Å) : 0.961 +/- 0.305

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 45-90 rho (°): 270-315
Consensus Sequence: XXcXppXp
(φψ)-conformation: aalbabaa
Pattern: xx[afgiklmv][efklm][deknqrty]xx[AGKNR]x[adegknrst][DGKNST]x[denqrsty]x[afiltv]
Conservation:-0.882-0.303-0.1880.0460.505-0.552-0.7173.099-0.672-0.1900.909-1.003-0.017-0.2330.196
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a04_A_1841a04   A192206KHMLKKMKLKSRVEAHHHHHHHT--SHHHHaaaaaaalbabaaaa
1aih_A_2971aih   A298312LVLKEILGHSTIEMTHHHHHHHT-SSHHHHaaaaaaavxabaaaa
1b0x_A_9291b0x   A929943KDNFTAAGYTTLEAVHHHHHHTT--SHHHHaaaaaaavxabaaaa
1ci4_A_281ci4   A3145GKKLEERGFDKAYVVHHHHHHTT--SHHHHaaaaaaavxabaaaa
1d3g_A_3651d3g   A375389EALLKEQGFGGVTDAHHHHHHTT-SSHHHHaaaaaaavxabaaaa
1eb6_A_371eb6   A3852SKFEEYFKTTDQQTRHHHHHHHS---HHHHaaaaaaavbaxaaaa
1eep_A_3521eep   A364378MSGMGYLGAATISDLHHHHHHHT-SSHHHHaaaaaaavbabaaaa
1ep3_A_2791ep3   A288302PELMDQYRIESLESLHHHHHHTT-S-HHHHaaaaaaalbabaaaa
1f44_A_3061f44   A307321PEIMQAGGWTNVNIVHHHHHHHT---HHHHaaaaaaavxabaaaa
1fse_A_401fse   A4862SNAMQKLGVKGRSQAHHHHHHHT-SSHHHHaaaaaaavbabaaaa
1h76_A_4671h76   A471485GLLYNKINSCKFDQFHHHHHHH--S-HHHHaaaaaaalbaxaaaa
1ile_*_881ile   -93107LEVEKKLGLKSKREIHHHHHHTT--SHHHHaaaaaaavxabaaaa
1qh5_A_2301qh5   A230244KTVQQHAGETDPVTTHHHHHHHT-SSHHHHaaaaaaavbabaaaa
1r7i_A_3361r7i   A339353QLSLRILGVKTAQALHHHHHHHT--SHHHHaaaaaaavxabaaaa
1rzt_A_3461rzt   A349363AQMWYQQGFRSLEDIHHHHHHTT--SHHHHaaaaaaavxabaaaa
1sek_*_631sek   -6781DELLRALALPNDNVTHHHHHHHT---HHHHaaaaaaalbabaaaa
1uum_A_3651uum   A375389EALLKERGFTTVTDAHHHHHHTT-SSHHHHaaaaaaavxabaaaa
1vk4_A_1741vk4   A175189REAETLTGTNDLRESHHHHHHHS-S-HHHHaaaaaaavbaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ci4_A_281ci4   A     MSESELENOMETHIONINE A - 42
1ci4_A_281ci4   A     MSESELENOMETHIONINE Y - 43
1ci4_A_281ci4   A     MSESELENOMETHIONINE V - 44
1ci4_A_281ci4   A     MSESELENOMETHIONINE L - 46
1ile_*_881ile   *     ZNZINC ION L - 89
1ile_*_881ile   *     ZNZINC ION L - 93
1qh5_A_2301qh5   A     GTTGLUTATHIONE R - 249
1qh5_A_2301qh5   A     GTTGLUTATHIONE K - 252
1qh5_A_2301qh5   A     GTTGLUTATHIONE D - 253
1r7i_A_3361r7i   A     GOLGLYCEROL L - 342
1r7i_A_3361r7i   A     GOLGLYCEROL R - 343
1r7i_A_3361r7i   A     GOLGLYCEROL I - 344
1r7i_A_3361r7i   A     GOLGLYCEROL G - 346
1r7i_A_3361r7i   A     GOLGLYCEROL V - 347
1r7i_A_3361r7i   A     GOLGLYCEROL K - 348
1r7i_A_3361r7i   A     GOLGLYCEROL Q - 364
1r7i_A_3361r7i   A     GOLGLYCEROL N - 365
1r7i_A_3361r7i   A     GOLGLYCEROL A - 368
1r7i_A_3361r7i   A     GOLGLYCEROL M - 369
1r7i_A_3361r7i   A     GOLGLYCEROL L - 372
1uum_A_3651uum   A     AFI2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE P - 365

Clusters included in this Subclass
CLUSTER: HH.3.80
CLUSTER: HH.4.41
CLUSTER: HH.5.19
CLUSTER: HH.5.239
CLUSTER: HH.6.75