ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.8.2

Subclass Accession number: 4799
Subclass: 4.8.2

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 40.0 +/- 15.1
Average RMSD (Å) : 0.167 +/- 0.058

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 45-90

rho (°): 45-90

Consensus Sequence:	hNXhXphh
(φψ)-conformation:	aalbabaa

Pattern:	[FY]	[EP]	[EKR]	[Y]	[V]	x	[L]	x	[NT]	[EKQ]	[AM]	[A]	[KR]	[AL]	[N]	x	[FY]	x	[DS]	[AGY]	[AG]	[DE]	x	[W]	x
Conservation:	0.723	-0.317	-0.384	1.627	0.334	-0.709	0.334	-1.246	-0.123	-0.288	-0.615	0.334	0.141	-0.675	1.196	-0.528	0.723	-1.006	-0.195	-1.054	-0.195	0.293	-0.958	3.350	-0.762

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1j37_A_178	1j37	A	181	205	FERYVELNTKAAKLNNFTSGAEAWL	HHHHHHHHHHHHHTTT-SSHHHHHH	aaaaaaaaaaaaaaavxabaaaaaa
1o8a_A_197	1o8a	A	197	221	YPKYVELINQAARLNGYVDAGDSWR	HHHHHHHHHHHHHTTT-SSHHHHHH	aaaaaaaaaaaaaaavbabaaaaaa
1r42_A_173	1r42	A	180	204	YEEYVVLKNEMARANHYEDYGDYWR	HHHHHHHHHHHHHHTT-SSHHHHHH	aaaaaaaaaaaaaaavbabaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass