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Information on SUBCLASS 4.16.1
Subclass Accession number: 4822
Subclass: 4.16.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 14.4 +/- 14.6
Average RMSD (Å) : 0.982 +/- 0.309

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXGXppXp
(φψ)-conformation: aagpabaa
Pattern: [adeqrst]xxx[ADNQR]x[EGQ]x[dknrt][DENRST]xxx[AIKLV]
Conservation:-0.074-0.773-0.249-1.0510.275-0.7922.766-0.0050.1540.586-1.156-0.018-0.5780.915
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1am7_A_761am7   A7689AYRKQLGLKDFSPKHHHHHHT-----HHaaaaaavxabaxaa
1b0x_A_9291b0x   A930943DNFTAAGYTTLEAVHHHHHTT--SHHHHaaaaaavxabaaaa
1b4f_A_271b4f   A2841ESFANAGFTSFDVVHHHHHTT--SHHHHaaaaaavxabaaaa
1bpy_A_1081bpy   A112125RKFVDEGIKTLEDLHHHHHTT--SHHHHaaaaaavxNbaaaa
1gwu_A_1451gwu   A150163DSFRNVGLNRSSDLHHHHHHT---HHHHaaaaaagbaxaaaa
1jb0_A_1431jb0   A145158QLWRASGITNEFQLHHHHHHT--SHHHHaaaaaavxabaaaa
1jgt_A_3091jgt   A311324YAVWASESVDPDIIHHHHHH----HHHHaaaaaalbaxaaaa
1jms_A_2601jms   A264277EKWFRMGFRTLSKIHHHHHTT--SHHHHaaaaaagxabaaaa
1nqe_A_311nqe   A3245QDIDRWQSTSVNDVHHHHHHT-SSHHHHaaaaaavpabaaaa
1q5v_A_101q5v   A1831SLSQRRGYNNRSEAHHHHHHT-SSHHHHaaaaaavpabaaaa
1usg_A_2751usg   A289302TALERTGSDEPLALHHHHHH----HHHHaaaaaavxaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN A - 76
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN Y - 77
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN R - 78
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN K - 79
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN L - 83
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN K - 84
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN D - 85
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN F - 86
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN S - 87
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN S - 90
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN Q - 91
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN V - 94
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN A - 95
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN L - 96
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN Q - 98
1am7_A_761am7   A     TRNNZ2-TRYPTOPHAN I - 99
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 148
1gwu_A_1451gwu   A     CACALCIUM ION L - 148
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 151
1gwu_A_1451gwu   A     CACALCIUM ION S - 151
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 152
1gwu_A_1451gwu   A     CACALCIUM ION F - 152
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 163
1gwu_A_1451gwu   A     CACALCIUM ION L - 163
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 166
1gwu_A_1451gwu   A     CACALCIUM ION L - 166
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 167
1gwu_A_1451gwu   A     CACALCIUM ION S - 167
1jb0_A_1431jb0   A     CACALCIUM ION L - 143
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 143
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Q - 145
1jb0_A_1431jb0   A     CACALCIUM ION L - 146
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 146
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A W - 147
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 149
1jb0_A_1431jb0   A     CACALCIUM ION S - 150
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A S - 150
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 151
1jb0_A_1431jb0   A     CACALCIUM ION I - 152
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A I - 152
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A T - 153
1jb0_A_1431jb0   A     CACALCIUM ION F - 156
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 156
1jb0_A_1431jb0   A     CACALCIUM ION Q - 157
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Q - 157
1jb0_A_1431jb0   A     CACALCIUM ION C - 160
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A C - 160
1jb0_A_1431jb0   A     BCRBETA-CAROTENE C - 160
1jb0_A_1431jb0   A     CACALCIUM ION T - 161
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A T - 161
1jb0_A_1431jb0   A     BCRBETA-CAROTENE T - 161
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 162
1jb0_A_1431jb0   A     BCRBETA-CAROTENE A - 162
1jb0_A_1431jb0   A     BCRBETA-CAROTENE I - 163
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 164
1jb0_A_1431jb0   A     BCRBETA-CAROTENE G - 164
1jb0_A_1431jb0   A     BCRBETA-CAROTENE G - 165
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 166
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A M - 168
1jb0_A_1431jb0   A     BCRBETA-CAROTENE M - 168
1jb0_A_1431jb0   A     CACALCIUM ION L - 171
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 171
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A M - 172
1jb0_A_1431jb0   A     CACALCIUM ION L - 173
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A L - 173
1jb0_A_1431jb0   A     CACALCIUM ION F - 174
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 174
1jb0_A_1431jb0   A     CACALCIUM ION A - 175
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A A - 175
1jb0_A_1431jb0   A     CACALCIUM ION G - 176
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A G - 176
1jb0_A_1431jb0   A     CACALCIUM ION W - 177
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A W - 177
1jb0_A_1431jb0   A     CACALCIUM ION F - 178
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A F - 178
1jb0_A_1431jb0   A     CACALCIUM ION H - 179
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A H - 179
1jb0_A_1431jb0   A     CACALCIUM ION Y - 180
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A Y - 180
1jb0_A_1431jb0   A     CL1ALPHA CHLOROPHYLL A H - 181
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE I - 323
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE Y - 326
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 327
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER P - 329
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE P - 329
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 330
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 330
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 333
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER Y - 334

Clusters included in this Subclass
CLUSTER: HH.4.87
CLUSTER: HH.5.67
CLUSTER: HH.6.115