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Information on SUBCLASS 5.3.1
Subclass Accession number: 4878
Subclass: 5.3.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 19

Average sequence ID (%) : 12.3 +/- 16.0
Average RMSD (Å) : 0.811 +/- 0.370

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hXpXpXXXX
(φψ)-conformation: aapaappaa
Pattern: [adeknqrst]x[acfilmtv]x[adeknrst]x[adeknqs]x[agnpst]xxxx
Conservation:0.079-1.4040.813-1.1911.549-0.2521.0560.3211.490-0.760-0.109-0.488-1.103
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ak0_*_861ak0   -95107QRVSDSSLSSENHHHHT-TTS-HHHHaaaaxaaxxaaaa
1brm_A_1871brm   A188200DELATPSSAILDIHHHH-TT--HHHHaaaaxaabxaaaa
1ee4_A_1321ee4   A136148VEFMRENQPEMLQHHTTSTTS-HHHHaaaapaaxwaaaa
1eex_A_841eex   A89101NMLCDPNVKRSEIHHHH-TTS-HHHHaaaaxaaxxaaaa
1f2e_A_1051f2e   A110122VPLFAPATSDEAKHHHH-SS--HHHHaaaaxaapxaaaa
1gnl_A_1681gnl   A179191AKTLDDSLSVADLHHTT-TT--HHHHaaaaxaaxxaaaa
1gwi_A_1671gwi   A175187EKFFSTQTPPEEVHHHH-TTS-HHHHaaaaxaaxpaaaa
1hu3_A_9581hu3   A958970KIVKERKTSSRIRHHHHS-SS-HHHHaaaaxaabpaaaa
1ibr_B_1291ibr   B135147ANVTNPNSTEHMKHHHH-TT--HHHHaaaapaaxxaaaa
1iwp_A_851iwp   A90102RMLVDIHVSREEIHHHH-TTS-HHHHaaaaxaabxaaaa
1jlr_A_431jlr   A5062TIIRDKETPKEEFHHHH-TT--HHHHaaaaxaaxxaaaa
1kxp_D_4351kxp   D450462SNCCSINSPPLYCHHHSSTT--HHHHaaaabaaxxaaaa
1n1b_A_2581n1b   A264276AYARRPDMNPLIFHHHH-TT--HHHHaaaaxaapxaaaa
1nm8_A_4521nm8   A459471KAMDDSSVTEHQKHHHT-TTS-HHHHaaaaxaabxaaaa
1nwc_A_1881nwc   A189201SELKDPASSILDIHHHH-TTS-HHHHaaaaxaaxxaaaa
1o5o_A_101o5o   A1729TIMRDKNTGPKEFHHHHSTT--HHHHaaaapaaxxaaaa
1orj_A_10761orj   A10911103NTLVKVDKTKEELHHHH-TT--HHHHaaaapaaxbaaaa
1orj_B_20771orj   B20912103NTLVKVDKTKEELHHHH-SS--HHHHaaaaxaaxbaaaa
2pgd_*_2122pgd   -221233EWNKTELDSFLIEHHTTTTT-BHHHHaaaabaapbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ak0_*_861ak0   *     NAGN-ACETYL-D-GLUCOSAMINE S - 88
1ak0_*_861ak0   *     NAGN-ACETYL-D-GLUCOSAMINE A - 89
1ak0_*_861ak0   *     NAGN-ACETYL-D-GLUCOSAMINE N - 92
1ak0_*_861ak0   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 93
1ak0_*_861ak0   *     NAGN-ACETYL-D-GLUCOSAMINE R - 96
1ak0_*_861ak0   *     NAGN-ACETYL-D-GLUCOSAMINE N - 106
1ak0_*_861ak0   *     NAGN-ACETYL-D-GLUCOSAMINE E - 109
1ak0_*_861ak0   *     NAGN-ACETYL-D-GLUCOSAMINE F - 113
1ak0_*_861ak0   *     ZNZINC ION H - 116
1ak0_*_861ak0   *     ZNZINC ION F - 117
1ak0_*_861ak0   *     ZNZINC ION G - 119
1ak0_*_861ak0   *     ZNZINC ION D - 120
1ak0_*_861ak0   *     THSTHYMIDINE-5'-(DITHIO)PHOSPHATE D - 120
1f2e_A_1051f2e   A     GTTGLUTATHIONE H - 106
1f2e_A_1051f2e   A     GTTGLUTATHIONE K - 107
1hu3_A_9581hu3   A     MSESELENOMETHIONINE K - 958
1hu3_A_9581hu3   A     MSESELENOMETHIONINE I - 959
1hu3_A_9581hu3   A     MSESELENOMETHIONINE V - 960
1hu3_A_9581hu3   A     MSESELENOMETHIONINE K - 961
1hu3_A_9581hu3   A     MSESELENOMETHIONINE S - 967
1hu3_A_9581hu3   A     MSESELENOMETHIONINE R - 968
1hu3_A_9581hu3   A     MSESELENOMETHIONINE I - 969
1hu3_A_9581hu3   A     MSESELENOMETHIONINE R - 970
1jlr_A_431jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE Q - 44
1jlr_A_431jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE K - 59
1jlr_A_431jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE E - 60
1jlr_A_431jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE F - 64
1jlr_A_431jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE Y - 65
1jlr_A_431jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE R - 68
1jlr_A_431jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE E - 75

Clusters included in this Subclass
CLUSTER: HH.4.47
CLUSTER: HH.5.33
CLUSTER: HH.6.11