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Information on SUBCLASS 5.3.6
Subclass Accession number: 4883
Subclass: 5.3.6 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 14.9 +/- 14.4
Average RMSD (Å) : 0.967 +/- 0.289

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hhppphpph
(φψ)-conformation: aapaappaa
Pattern: [PQ]xx[KR][DK]x[AFL][DNR]x[AL][LVY][DR]x[AIV][FGI][DS][KST][DET][AL][DST][QY][AG][E]xx[ASV]x[FIT][A][AR][LTV][EHY]x[IVW][AFL]x[QS][AGL]
Conservation:1.356-0.991-0.7891.8160.937-0.587-0.6880.020-1.1940.063-0.1830.277-0.4860.121-1.2951.317-0.0810.1210.0630.0200.7840.7073.053-0.991-0.587-0.486-1.295-0.5872.1430.443-0.1830.525-0.688-0.183-0.688-1.2950.603-1.093
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h0o_A_2021h0o   A202239PCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGHHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaxaapxaaaaaaaaaaaaaaaaaa
1nh1_A_2231nh1   A224261PIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAHHHHHHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaxaaxxaaaaaaaaaaaaaaaaaa
1odo_A_1611odo   A161198QDRRDGFRALVDGVFDTTLDQAEAQANTARLYEVLDQLHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaaaxaaxxaaaaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h0o_A_2021h0o   A     COCOBALT (II) ION E - 233
1h0o_A_2021h0o   A     COCOBALT (II) ION F - 237
1odo_A_1611odo   A     PIM4-PHENYL-1H-IMIDAZOLE V - 174
1odo_A_1611odo   A     PIM4-PHENYL-1H-IMIDAZOLE F - 175
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0o_A_2021h0o   A CO1CO BINDING SITE FOR CHAIN AE - 233

Clusters included in this Subclass
CLUSTER: HH.5.198