Information on SUBCLASS 5.4.2 |
Subclass Accession number: 4885
Subclass: 5.4.2 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 14.6 +/- 14.2 Average RMSD (Å) : 0.760 +/- 0.288 Consensus geometry
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Consensus Sequence: | XhGhphpXX |
(φψ)-conformation: | aalppppaa |
Pattern: | [AEPT] | x | [anv] | [CLT] | [G] | [aiv] | [EHPRS] | [ILPY] | [DHNPT] | x | [dptv] | x | [ikl] |
Conservation: | 0.006 | -0.427 | -0.206 | 0.335 | 3.176 | -0.107 | -0.182 | -0.240 | -0.108 | -0.721 | -0.697 | -0.653 | -0.175 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ef8_A_133 | 1ef8 | A | 133 | 145 | PVNLGVPYNLVGI | HHHHT----HHHH | aaaavxxpxaaaa |
1p80_A_552 | 1p80 | A | 559 | 571 | AKNLGIELTDDQL | HHHHT----HHHH | aaaavbbxxaaaa |
1r5a_A_106 | 1r5a | A | 117 | 129 | TIHLGAHLDQTKK | HHHH-----HHHH | aaaalxxxbaaaa |
1r6t_A_114 | 1r6t | A | 121 | 133 | ERATGQRPHHFLR | HHHH-S---HHHH | aaaavbxppaaaa |
1v93_A_214 | 1v93 | A | 221 | 233 | TEVCGASIPGPLL | HHHH-----HHHH | aaaavxbbxaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1r5a_A_106 | 1r5a | A | GTSGLUTATHIONE SULFONIC ACID | Y - 107 |
1r5a_A_106 | 1r5a | A | GTSGLUTATHIONE SULFONIC ACID | F - 115 |
1r5a_A_106 | 1r5a | A | GTSGLUTATHIONE SULFONIC ACID | H - 119 |
1r6t_A_114 | 1r6t | A | MSESELENOMETHIONINE | L - 116 |
1r6t_A_114 | 1r6t | A | MSESELENOMETHIONINE | R - 119 |
1r6t_A_114 | 1r6t | A | MSESELENOMETHIONINE | I - 120 |
1v93_A_214 | 1v93 | A | DOXDIOXANE | K - 235 |
Clusters included in this Subclass |
CLUSTER: HH.4.135 |