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Information on SUBCLASS 5.4.2
Subclass Accession number: 4885
Subclass: 5.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 14.6 +/- 14.2
Average RMSD (Å) : 0.760 +/- 0.288

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XhGhphpXX
(φψ)-conformation: aalppppaa
Pattern: [AEPT]x[anv][CLT][G][aiv][EHPRS][ILPY][DHNPT]x[dptv]x[ikl]
Conservation:0.006-0.427-0.2060.3353.176-0.107-0.182-0.240-0.108-0.721-0.697-0.653-0.175
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ef8_A_1331ef8   A133145PVNLGVPYNLVGIHHHHT----HHHHaaaavxxpxaaaa
1p80_A_5521p80   A559571AKNLGIELTDDQLHHHHT----HHHHaaaavbbxxaaaa
1r5a_A_1061r5a   A117129TIHLGAHLDQTKKHHHH-----HHHHaaaalxxxbaaaa
1r6t_A_1141r6t   A121133ERATGQRPHHFLRHHHH-S---HHHHaaaavbxppaaaa
1v93_A_2141v93   A221233TEVCGASIPGPLLHHHH-----HHHHaaaavxbbxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1r5a_A_1061r5a   A     GTSGLUTATHIONE SULFONIC ACID Y - 107
1r5a_A_1061r5a   A     GTSGLUTATHIONE SULFONIC ACID F - 115
1r5a_A_1061r5a   A     GTSGLUTATHIONE SULFONIC ACID H - 119
1r6t_A_1141r6t   A     MSESELENOMETHIONINE L - 116
1r6t_A_1141r6t   A     MSESELENOMETHIONINE R - 119
1r6t_A_1141r6t   A     MSESELENOMETHIONINE I - 120
1v93_A_2141v93   A     DOXDIOXANE K - 235

Clusters included in this Subclass
CLUSTER: HH.4.135