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Information on SUBCLASS 5.6.2
Subclass Accession number: 4890
Subclass: 5.6.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 13.0 +/- 16.7
Average RMSD (Å) : 0.750 +/- 0.201

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XpcXhXpXp
(φψ)-conformation: aalababaa
Pattern: x[denqrs][ltv][ailmv][adegr]x[ekl]x[adegkrs]x[EGNR]x[fiy][adeknqrt][DKST]x[aek]x[aefkl]xxx[aiklt]
Conservation:-0.5500.4230.3150.802-0.305-0.1270.070-0.787-0.639-0.5512.531-0.9671.207-0.1732.048-1.0701.4760.037-0.508-0.966-0.746-0.560-0.963
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cf2_O_3051cf2   O307329ENVDAVRAILEMEEDKYKSINKTHHHHHHHHHTTS-S-HHHHHHHHaaaaaaaaaalabaxaaaaaaaa
1e6i_A_3741e6i   A374396LSTMEIKLESNKYQKMEDFIYDAHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaavababaaaaaaaa
1eqf_A_14271eqf   A14271449LQTLRENVRKRLYPSREEFREHLHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaalababaaaaaaaa
1i1n_A_91i1n   A1032SELIHNLRKNGIIKTDKVFEVMLHHHHHHHHHTTS--SHHHHHHHHaaaaaaaaaavaxabaaaaaaaa
1icr_A_921icr   A96118KLVVDQEDADGRFATPEAKAANDHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaavababaaaaaaaa
1jg1_A_151jg1   A2244MRTVEMLKAEGIIRSKEVERAFLHHHHHHHHHTTS--SHHHHHHHHaaaaaaaaaavaxabaaaaaaaa
1jj2_O_1161jj2   O119141YRDLYDKAGGGEFDSVADLERYIHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaavababaaaaaaaa
1kqb_A_921kqb   A96118ERVVDQEEADGRFNTPEAKAANHHHHHHHHHHTT--SSHHHHHHHHaaaaaaaaaavababaaaaaaaa
1nh1_A_601nh1   A7395IRSAGDEISRGGITSFEELWGRAHHHHHHHHHTTS--SHHHHHHHHaaaaaaaaaavababaaaaaaaa
1r18_A_101r18   A1133EDLIRQLKDHGVIASDAVAQAMKHHHHHHHHHTTS---HHHHHHHHaaaaaaaaaavabaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE N - 402
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE C - 403
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE Y - 406
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE E - 102
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE R - 107
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE R - 121
1icr_A_921icr   A     NIONICOTINIC ACID F - 124
1kqb_A_921kqb   A     BEZBENZOIC ACID F - 124

Clusters included in this Subclass
CLUSTER: HH.7.6