Information on SUBCLASS 5.6.2 |
Subclass Accession number: 4890
Subclass: 5.6.2 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 10 Average sequence ID (%) : 13.0 +/- 16.7 Average RMSD (Å) : 0.750 +/- 0.201 Consensus geometry
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Consensus Sequence: | XpcXhXpXp |
(φψ)-conformation: | aalababaa |
Pattern: | x | [denqrs] | [ltv] | [ailmv] | [adegr] | x | [ekl] | x | [adegkrs] | x | [EGNR] | x | [fiy] | [adeknqrt] | [DKST] | x | [aek] | x | [aefkl] | x | x | x | [aiklt] |
Conservation: | -0.550 | 0.423 | 0.315 | 0.802 | -0.305 | -0.127 | 0.070 | -0.787 | -0.639 | -0.551 | 2.531 | -0.967 | 1.207 | -0.173 | 2.048 | -1.070 | 1.476 | 0.037 | -0.508 | -0.966 | -0.746 | -0.560 | -0.963 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cf2_O_305 | 1cf2 | O | 307 | 329 | ENVDAVRAILEMEEDKYKSINKT | HHHHHHHHHTTS-S-HHHHHHHH | aaaaaaaaaalabaxaaaaaaaa |
1e6i_A_374 | 1e6i | A | 374 | 396 | LSTMEIKLESNKYQKMEDFIYDA | HHHHHHHHHTT--SSHHHHHHHH | aaaaaaaaaavababaaaaaaaa |
1eqf_A_1427 | 1eqf | A | 1427 | 1449 | LQTLRENVRKRLYPSREEFREHL | HHHHHHHHHTT--SSHHHHHHHH | aaaaaaaaaalababaaaaaaaa |
1i1n_A_9 | 1i1n | A | 10 | 32 | SELIHNLRKNGIIKTDKVFEVML | HHHHHHHHHTTS--SHHHHHHHH | aaaaaaaaaavaxabaaaaaaaa |
1icr_A_92 | 1icr | A | 96 | 118 | KLVVDQEDADGRFATPEAKAAND | HHHHHHHHHTT--SSHHHHHHHH | aaaaaaaaaavababaaaaaaaa |
1jg1_A_15 | 1jg1 | A | 22 | 44 | MRTVEMLKAEGIIRSKEVERAFL | HHHHHHHHHTTS--SHHHHHHHH | aaaaaaaaaavaxabaaaaaaaa |
1jj2_O_116 | 1jj2 | O | 119 | 141 | YRDLYDKAGGGEFDSVADLERYI | HHHHHHHHHTT--SSHHHHHHHH | aaaaaaaaaavababaaaaaaaa |
1kqb_A_92 | 1kqb | A | 96 | 118 | ERVVDQEEADGRFNTPEAKAANH | HHHHHHHHHTT--SSHHHHHHHH | aaaaaaaaaavababaaaaaaaa |
1nh1_A_60 | 1nh1 | A | 73 | 95 | IRSAGDEISRGGITSFEELWGRA | HHHHHHHHHTTS--SHHHHHHHH | aaaaaaaaaavababaaaaaaaa |
1r18_A_10 | 1r18 | A | 11 | 33 | EDLIRQLKDHGVIASDAVAQAMK | HHHHHHHHHTTS---HHHHHHHH | aaaaaaaaaavabaxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e6i_A_374 | 1e6i | A | ALYN(6)-ACETYLLYSINE | N - 402 |
1e6i_A_374 | 1e6i | A | ALYN(6)-ACETYLLYSINE | C - 403 |
1e6i_A_374 | 1e6i | A | ALYN(6)-ACETYLLYSINE | Y - 406 |
1icr_A_92 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | E - 102 |
1icr_A_92 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | R - 107 |
1icr_A_92 | 1icr | A | FMNFLAVIN MONONUCLEOTIDE | R - 121 |
1icr_A_92 | 1icr | A | NIONICOTINIC ACID | F - 124 |
1kqb_A_92 | 1kqb | A | BEZBENZOIC ACID | F - 124 |
Clusters included in this Subclass |
CLUSTER: HH.7.6 |