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Information on SUBCLASS 5.8.1
Subclass Accession number: 4896
Subclass: 5.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 11.1 +/- 12.9
Average RMSD (Å) : 1.079 +/- 0.297

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXcXXhpXp
(φψ)-conformation: aalbpbpaa
Pattern: [adegkq]xx[aegknrt]xx[DGKNRS]x[DEHKNPR][filv][AEGKQST]x[adegkqst]x[filvy][adegknr]
Conservation:-0.393-0.492-1.333-0.421-0.778-0.1321.933-1.2000.9341.8941.1050.272-0.442-0.6870.311-0.573
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ais_B_11511ais   B11611176AACRLLKVPRTLDEIAHHHHHHT----HHHHHaaaaaavbwbpaaaaa
1bg6_*_2101bg6   -210225AARCESGTPFQYYLEGHHHHHTT---BHHHHHaaaaaavxpbxaaaaa
1cfr_*_351cfr   -4863DEAIRLGGKISDGSFNHHHHHHT-B--HHHHHaaaaaavbbbxaaaaa
1dlc_*_1031dlc   -112127QVEALMDQKIADYAKNHHHHHHT----HHHHHaaaaaalbbxpaaaaa
1dvo_A_1001dvo   A106121EDVAQRNIPLSHKKLRHHHHHTT-S--HHHHHaaaaaalxxbxaaaaa
1ehk_A_4041ehk   A404419LLPNLTGKPISDAQRRHHHHHH-----HHHHHaaaaaagxxbxaaaaa
1g2r_A_641g2r   A6479VFNRSFSMEVEESFYDHHHHHHTS---HHHHHaaaaaalbxxxaaaaa
1gak_A_81gak   A3146KRFRDMRWNLGPGFVFHHHHHHT----HHHHHaaaaaavbpxxaaaaa
1gux_B_7001gux   B710725GICKVKNIDLKFKIIVHHHHHTT----HHHHHaaaaaalbxbxaaaaa
1juo_A_1221juo   A127142KALTTMGFRLSPQAVNHHHHHTT----HHHHHaaaaaagxbbxaaaaa
1kkh_A_1161kkh   A127142AVSGFYNKELKDDEIAHHHHTTT----HHHHHaaaaaalbxxxaaaaa
1o5z_A_2591o5z   A269284KTLEATGLPLSEKAIRHHHHHH-----HHHHHaaaaaavxwbxaaaaa
1tn4_*_1121tn4   -117132EIFRASGEHVTDEEIEHHHHHTT----HHHHHaaaaaavbxbxaaaaa
1uw3_A_1731uw3   A189204VTTTTKGENFTETDIKHHHHHTT----HHHHHaaaaaavbbbxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ehk_A_4041ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 428
1ehk_A_4041ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 432
1ehk_A_4041ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 435
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE A - 436
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE V - 437
1ehk_A_4041ehk   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 439
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE H - 440
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE W - 441
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE A - 442
1ehk_A_4041ehk   A     BNGB-NONYLGLUCOSIDE L - 444
1kkh_A_1161kkh   A     DIO1,4-DIETHYLENE DIOXIDE S - 116
1kkh_A_1161kkh   A     DIO1,4-DIETHYLENE DIOXIDE S - 117
1kkh_A_1161kkh   A     DIO1,4-DIETHYLENE DIOXIDE A - 118
1tn4_*_1121tn4   *     CACALCIUM ION E - 113
1tn4_*_1121tn4   *     CACALCIUM ION E - 114
1tn4_*_1121tn4   *     CACALCIUM ION G - 123
1tn4_*_1121tn4   *     CACALCIUM ION E - 124
1tn4_*_1121tn4   *     CACALCIUM ION H - 125
1tn4_*_1121tn4   *     CACALCIUM ION V - 126
1tn4_*_1121tn4   *     CACALCIUM ION T - 127
1tn4_*_1121tn4   *     CACALCIUM ION E - 130
1tn4_*_1121tn4   *     CACALCIUM ION G - 138
1uw3_A_1731uw3   A     PO4PHOSPHATE ION K - 204
1uw3_A_1731uw3   A     PO4PHOSPHATE ION R - 208
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1uw3_A_1731uw3   A AC2PO4 BINDING SITE FOR CHAIN AK - 204
1uw3_A_1731uw3   A AC2PO4 BINDING SITE FOR CHAIN AR - 208

Clusters included in this Subclass
CLUSTER: HH.4.136
CLUSTER: HH.5.105
CLUSTER: HH.6.19