Information on SUBCLASS 5.17.1 |
Subclass Accession number: 4907
Subclass: 5.17.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 13.6 +/- 17.9 Average RMSD (Å) : 1.200 +/- 0.577 Consensus geometry
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Consensus Sequence: | ppchhhchX |
(φψ)-conformation: | aalapppaa |
Pattern: | [AFPW] | x | x | x | [ENRS] | x | [GK] | x | x | [GLP] | [ADGN] | [APVY] | x | x | [CSY] | [QSWY] | x | [CIL] | x | x | [GKR] | [AIL] |
Conservation: | -1.052 | -0.443 | -0.531 | -0.227 | 0.515 | -0.443 | 2.470 | 0.118 | -1.574 | -0.461 | -0.007 | -0.878 | -0.295 | -0.157 | 0.141 | 0.080 | -1.767 | 1.453 | -0.111 | 1.646 | 0.569 | 0.954 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cs1_A_216 | 1cs1 | A | 224 | 245 | WWANNIGVTGGAFDSYLLLRGL | HHHHHHT-B--HHHHHHHHHHH | aaaaaavaxxxaaaaaaaaaaa |
1ibj_A_296 | 1ibj | A | 304 | 325 | FLQNSEGSGLAPFDCWLCLRGI | HHHHHTT-B--HHHHHHHHHHH | aaaaaalaxpxaaaaaaaaaaa |
1k3p_A_350 | 1k3p | A | 350 | 371 | PYFIEKKLYPNVDFYSGIILKA | HHHHHTT--B-HHHHHHHHHHH | aaaaaalaxwbaaaaaaaaaaa |
1ofn_A_176 | 1ofn | A | 177 | 198 | AEAQRQGLLPDYTTSQEIERRL | HHHHHTT-S-BHHHHHHHHHHH | aaaaaavaxxxaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1cs1_A_216 | 1cs1 | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | G - 230 |
1ibj_A_296 | 1ibj | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 310 |
1k3p_A_350 | 1k3p | A | SULSULFATE ANION | V - 361 |
1k3p_A_350 | 1k3p | A | SULSULFATE ANION | D - 362 |
Clusters included in this Subclass |
CLUSTER: HH.5.278 |
CLUSTER: HH.6.211 |