Information on SUBCLASS 5.21.1 |
Subclass Accession number: 4913
Subclass: 5.21.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 17.2 +/- 22.2 Average RMSD (Å) : 0.833 +/- 0.388 Consensus geometry
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Consensus Sequence: | XpXpXXXXp |
(φψ)-conformation: | aalapapaa |
Pattern: | [AKNR] | [hly] | [AFLY] | [aikv] | [ADNR] | [LY] | x | [DEKNS] | [gnqr] | [CDEKS] | x | x | x | x | [kns] | x | [DEQ] | [ader] | x |
Conservation: | 0.067 | 0.675 | 0.834 | -0.617 | 0.099 | 1.996 | -0.418 | 0.655 | -0.050 | -0.197 | -0.125 | -0.556 | -1.732 | -0.510 | -0.181 | -1.016 | 2.454 | -1.005 | -0.375 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bgp_*_235 | 1bgp | - | 235 | 253 | KYYIDLVNREGLFVSDQDL | HHHHHHHTT--SSHHHHHH | aaaaaaaalaxaxaaaaaa |
1gwu_A_232 | 1gwu | A | 232 | 250 | KYYVNLEEQKGLIQSDQEL | HHHHHHHTT--SSHHHHHH | aaaaaaaavaxaxaaaaaa |
1h1o_A_40 | 1h1o | A | 45 | 63 | AQLKAYKDHSRADQNGEIY | HHHHHHHTT----HHHHHH | aaaaaaaaUaxaxaaaaaa |
1mk0_A_24 | 1mk0 | A | 30 | 48 | RHFKDLEKGCHSSIKLQRS | HHHHHHHHT--S-HHHHHH | aaaaaaaavaxabaaaaaa |
1pa2_A_231 | 1pa2 | A | 231 | 249 | NYFANLQSNDGLLQSDQEL | HHHHHHHTT--SSHHHHHH | aaaaaaaavaxaxaaaaaa |
1v8g_A_260 | 1v8g | A | 265 | 283 | ALARRLLKGEEKGPLADAV | HHHHHHHTT---SHHHHHH | aaaaaaaavaxaxaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h1o_A_40 | 1h1o | A | ZN2ZN BINDING SITE FOR CHAIN A | K - 40 |
1h1o_A_40 | 1h1o | A | H1BHEM BINDING SITE FOR CHAIN A | Y - 42 |
1h1o_A_40 | 1h1o | A | H1BHEM BINDING SITE FOR CHAIN A | Y - 50 |
1h1o_A_40 | 1h1o | A | H1BHEM BINDING SITE FOR CHAIN A | R - 55 |
1h1o_A_40 | 1h1o | A | H1BHEM BINDING SITE FOR CHAIN A | D - 57 |
1h1o_A_40 | 1h1o | A | H1BHEM BINDING SITE FOR CHAIN A | G - 60 |
1h1o_A_40 | 1h1o | A | H1BHEM BINDING SITE FOR CHAIN A | Y - 63 |
Clusters included in this Subclass |
CLUSTER: HH.5.94 |