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Information on SUBCLASS 5.24.1
Subclass Accession number: 4916
Subclass: 5.24.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 17.6 +/- 22.2
Average RMSD (Å) : 0.700 +/- 0.071

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXXXXpXh
(φψ)-conformation: aabpaapaa
Pattern: [hil]x[amv][AVY][EKQR][alpv][AFV][fit]x[ai][ACST][knrt][kmr][CEHY][lm][AGPQS][psv][itv][HT][PS][IVY][FRY][KL][GLY][AIL]
Conservation:-0.649-0.968-0.783-0.0590.983-1.079-0.145-0.704-0.894-0.7300.299-0.411-0.054-0.4850.217-0.560-0.622-0.2722.7232.4980.9730.6680.500-1.0390.593
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e6i_A_3891e6i   A393417IYDARLVFNNCRMYNGENTSYYKYAHHHHHHHHHHHHHHS-TTSHHHHHHaaaaaaaaaaaaaaxxaaxaaaaaa
1lox_*_3661lox   -366390HLMAEVFTVATMRCLPSIHPVFKLIHHHHHHHHHHHHHH--TTSHHHHHHaaaaaaaaaaaaaabxaaxaaaaaa
1n8q_A_5231n8q   A523547HAVVEPFIIATNRHLSVVHPIYKLLHHHHHHHHHHHHHHS-TTSHHHHHHaaaaaaaaaaaaaabxaaxaaaaaa
1o9d_A_1451o9d   A155179LTAYKAAQDIATTELAPTHPIRLGLHHHHHHHHHHHHHHS-TT-HHHHHHaaaaaaaaaaaaaabxaaxaaaaaa
1qjb_A_1421qjb   A146170QQAYQEAFEISKKEMQPTHPIRLGLHHHHHHHHHHHHHHS-TT-HHHHHHaaaaaaaaaaaaaabxaaxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e6i_A_3891e6i   A     ALYN(6)-ACETYLLYSINE N - 402
1e6i_A_3891e6i   A     ALYN(6)-ACETYLLYSINE C - 403
1e6i_A_3891e6i   A     ALYN(6)-ACETYLLYSINE Y - 406
1e6i_A_3891e6i   A     ALYN(6)-ACETYLLYSINE N - 407
1e6i_A_3891e6i   A     ALYN(6)-ACETYLLYSINE Y - 413
1lox_*_3661lox   *     FE2FE (II) ION H - 366
1lox_*_3661lox   *     RS73-(2-OCTYLPHENYL)PROPANOIC ACID H - 366
1n8q_A_5231n8q   A     FE2FE (II) ION H - 523
1n8q_A_5231n8q   A     DHB3,4-DIHYDROXYBENZOIC ACID H - 523
1o9d_A_1451o9d   A     TPOPHOSPHOTHREONINE L - 181
1o9d_A_1451o9d   A     TPOPHOSPHOTHREONINE N - 182
1o9d_A_1451o9d   A     TPOPHOSPHOTHREONINE V - 185
1qjb_A_1421qjb   A     SEPPHOSPHOSERINE L - 172
1qjb_A_1421qjb   A     SEPPHOSPHOSERINE N - 173
1qjb_A_1421qjb   A     SEPPHOSPHOSERINE V - 176
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1lox_*_3661lox   * NULCATALYTIC IRON AND ITS LIGANDS.H - 366

Clusters included in this Subclass
CLUSTER: HH.6.54