Information on SUBCLASS 5.24.1 |
Subclass Accession number: 4916
Subclass: 5.24.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 17.6 +/- 22.2 Average RMSD (Å) : 0.700 +/- 0.071 Consensus geometry
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Consensus Sequence: | XpXXXXpXh |
(φψ)-conformation: | aabpaapaa |
Pattern: | [hil] | x | [amv] | [AVY] | [EKQR] | [alpv] | [AFV] | [fit] | x | [ai] | [ACST] | [knrt] | [kmr] | [CEHY] | [lm] | [AGPQS] | [psv] | [itv] | [HT] | [PS] | [IVY] | [FRY] | [KL] | [GLY] | [AIL] |
Conservation: | -0.649 | -0.968 | -0.783 | -0.059 | 0.983 | -1.079 | -0.145 | -0.704 | -0.894 | -0.730 | 0.299 | -0.411 | -0.054 | -0.485 | 0.217 | -0.560 | -0.622 | -0.272 | 2.723 | 2.498 | 0.973 | 0.668 | 0.500 | -1.039 | 0.593 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e6i_A_389 | 1e6i | A | 393 | 417 | IYDARLVFNNCRMYNGENTSYYKYA | HHHHHHHHHHHHHHS-TTSHHHHHH | aaaaaaaaaaaaaaxxaaxaaaaaa |
1lox_*_366 | 1lox | - | 366 | 390 | HLMAEVFTVATMRCLPSIHPVFKLI | HHHHHHHHHHHHHH--TTSHHHHHH | aaaaaaaaaaaaaabxaaxaaaaaa |
1n8q_A_523 | 1n8q | A | 523 | 547 | HAVVEPFIIATNRHLSVVHPIYKLL | HHHHHHHHHHHHHHS-TTSHHHHHH | aaaaaaaaaaaaaabxaaxaaaaaa |
1o9d_A_145 | 1o9d | A | 155 | 179 | LTAYKAAQDIATTELAPTHPIRLGL | HHHHHHHHHHHHHHS-TT-HHHHHH | aaaaaaaaaaaaaabxaaxaaaaaa |
1qjb_A_142 | 1qjb | A | 146 | 170 | QQAYQEAFEISKKEMQPTHPIRLGL | HHHHHHHHHHHHHHS-TT-HHHHHH | aaaaaaaaaaaaaabxaaxaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e6i_A_389 | 1e6i | A | ALYN(6)-ACETYLLYSINE | N - 402 |
1e6i_A_389 | 1e6i | A | ALYN(6)-ACETYLLYSINE | C - 403 |
1e6i_A_389 | 1e6i | A | ALYN(6)-ACETYLLYSINE | Y - 406 |
1e6i_A_389 | 1e6i | A | ALYN(6)-ACETYLLYSINE | N - 407 |
1e6i_A_389 | 1e6i | A | ALYN(6)-ACETYLLYSINE | Y - 413 |
1lox_*_366 | 1lox | * | FE2FE (II) ION | H - 366 |
1lox_*_366 | 1lox | * | RS73-(2-OCTYLPHENYL)PROPANOIC ACID | H - 366 |
1n8q_A_523 | 1n8q | A | FE2FE (II) ION | H - 523 |
1n8q_A_523 | 1n8q | A | DHB3,4-DIHYDROXYBENZOIC ACID | H - 523 |
1o9d_A_145 | 1o9d | A | TPOPHOSPHOTHREONINE | L - 181 |
1o9d_A_145 | 1o9d | A | TPOPHOSPHOTHREONINE | N - 182 |
1o9d_A_145 | 1o9d | A | TPOPHOSPHOTHREONINE | V - 185 |
1qjb_A_142 | 1qjb | A | SEPPHOSPHOSERINE | L - 172 |
1qjb_A_142 | 1qjb | A | SEPPHOSPHOSERINE | N - 173 |
1qjb_A_142 | 1qjb | A | SEPPHOSPHOSERINE | V - 176 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1lox_*_366 | 1lox | * | NULCATALYTIC IRON AND ITS LIGANDS. | H - 366 |
Clusters included in this Subclass |
CLUSTER: HH.6.54 |