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Information on SUBCLASS 5.25.1
Subclass Accession number: 4917
Subclass: 5.25.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 16.7 +/- 23.4
Average RMSD (Å) : 0.625 +/- 0.150

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXXpXhh
(φψ)-conformation: aalaaapaa
Pattern: [AL][FGY][ADQS][AFL]x[DKNT]x[AQT]x[LT]x[DQ]x[LP][FMPW][HLW]xx[ALM]xx
Conservation:0.9750.035-0.287-0.034-0.868-0.034-0.708-0.0000.1811.1020.2632.450-0.7291.773-0.7930.583-0.877-1.1300.610-0.961-1.551
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1hz4_A_1071hz4   A117137AFQLINEQHLEQLPMHEFLVRHHHHHHHTT-TTSTHHHHHHHaaaaaaaalaaaxaaaaaaaa
1mpx_A_2531mpx   A253273AGDFAKAAGLEQLPWWHKLTEHHHHHHHTTGGGSHHHHHHHHaaaaaaaavaaaxaaaaaaaa
1nx9_A_2841nx9   A284304AGSFATQAGLDQYPFWQRMHAHHHHHHHHTGGG-HHHHHHHHaaaaaaaavaaaxaaaaaaaa
1uou_A_1931uou   A198218LYAARDVTATVDSLPLITASIHHHHHHHTT-SS-HHHHHHHHaaaaaaaalaaabaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1hz4_A_1071hz4   A     BEZBENZOIC ACID L - 126
1hz4_A_1071hz4   A     BEZBENZOIC ACID L - 129
1hz4_A_1071hz4   A     BEZBENZOIC ACID P - 130
1hz4_A_1071hz4   A     BEZBENZOIC ACID M - 131
1hz4_A_1071hz4   A     BEZBENZOIC ACID H - 132
1hz4_A_1071hz4   A     GOLGLYCEROL W - 144
1mpx_A_2531mpx   A     MSESELENOMETHIONINE W - 267
1mpx_A_2531mpx   A     CACALCIUM ION W - 267
1mpx_A_2531mpx   A     MSESELENOMETHIONINE K - 270
1mpx_A_2531mpx   A     CACALCIUM ION K - 270
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL D - 195
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL Y - 199
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL R - 202
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL V - 208
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL L - 213
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL I - 214
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL T - 215
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL S - 217
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL I - 218
1uou_A_1931uou   A     CMU5-CHLORO-6-(1-(2-IMINOPYRROLIDINYL) METHYL) URACIL K - 221
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1uou_A_1931uou   A AC1CMU BINDING SITE FOR CHAIN AR - 202
1uou_A_1931uou   A AC1CMU BINDING SITE FOR CHAIN AI - 214
1uou_A_1931uou   A AC1CMU BINDING SITE FOR CHAIN AS - 217

Clusters included in this Subclass
CLUSTER: HH.6.93