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Information on SUBCLASS 5.38.1
Subclass Accession number: 4930
Subclass: 5.38.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 14.6 +/- 15.5
Average RMSD (Å) : 1.033 +/- 0.451

Consensus geometry
d (Å): 11 delta (°): 135-180 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: pXXhXhXhX
(φψ)-conformation: aalpabpaa
Pattern: xx[KS][DRS][AN][EG][IL][GPQ][FV][NPS][AV][FGT][EQR][ILV][HS][EGR]
Conservation:-0.977-0.9770.584-0.855-0.3130.4451.441-0.9770.807-0.3690.477-1.5850.6030.9681.706-0.977
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1izm_A_101izm   A1126QLKSAGIGFNATELHGHHHHTT-S--HHHHHHaaaaavxabxaaaaaa
1kx5_C_171kx5   C1732RSSRAGLQFPVGRVHRHHHHHT-SS-HHHHHHaaaaavbaxxaaaaaa
1skn_P_4601skn   P464479LASDNELPVSAFQISEHHHHTT-SS-HHHHHHaaaaalxabxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1izm_A_101izm   A     MSESELENOMETHIONINE Q - 10
1izm_A_101izm   A     MSESELENOMETHIONINE Q - 11
1izm_A_101izm   A     MSESELENOMETHIONINE L - 12
1izm_A_101izm   A     MSESELENOMETHIONINE K - 13
1izm_A_101izm   A     MSESELENOMETHIONINE N - 20
1izm_A_101izm   A     MSESELENOMETHIONINE A - 21
1izm_A_101izm   A     MSESELENOMETHIONINE L - 24
1izm_A_101izm   A     MSESELENOMETHIONINE C - 33
1skn_P_4601skn   P     LDALAURYL DIMETHYLAMINE-N-OXIDE P - 471
1skn_P_4601skn   P     LDALAURYL DIMETHYLAMINE-N-OXIDE V - 472
1skn_P_4601skn   P     LDALAURYL DIMETHYLAMINE-N-OXIDE Q - 476
1skn_P_4601skn   P     LDALAURYL DIMETHYLAMINE-N-OXIDE I - 477
1skn_P_4601skn   P     LDALAURYL DIMETHYLAMINE-N-OXIDE E - 479

Clusters included in this Subclass
CLUSTER: HH.5.220