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Information on SUBCLASS 5.40.1
Subclass Accession number: 4932
Subclass: 5.40.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005524 (>75 %)  GO:0030554 (>75 %)  
Number of loops: 3

Average sequence ID (%) : 9.1 +/- 9.3
Average RMSD (Å) : 1.267 +/- 0.321

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXXhXXXh
(φψ)-conformation: aappbapaa
Pattern: [GL]x[AQS]x[ALW]x[ERY]x[DEP][LY]xx[KPR][AFG][AEP]x[EMR][AG][AR]xxx
Conservation:-0.604-1.1580.436-0.578-0.433-1.592-0.144-0.7231.1601.297-1.1580.8230.726-0.5780.001-0.723-0.1442.5750.9980.581-1.0130.252
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ewq_A_2821ewq   A287308LLQSWLRHPLLDRGPLEARLDRHHHHHHHS----HHHHHHHHHHaaaaaaabxxaxaaaaaaaaaa
1kp8_A_531kp8   A5374GVSVAREIELEDKFENMGAQMVHHHHHHH---SSHHHHHHHHHHaaaaaaaxbbaxaaaaaaaaaa
1rlr_*_4781rlr   -489510LDALLDYQDYPIPAAKRGAMGRHHHHHHHS--SSHHHHHHHHHHaaaaaaaxxbabaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ewq_A_2821ewq   A     MSESELENOMETHIONINE R - 293
1ewq_A_2821ewq   A     EDO1,2-ETHANEDIOL R - 293
1ewq_A_2821ewq   A     MSESELENOMETHIONINE H - 294
1ewq_A_2821ewq   A     EDO1,2-ETHANEDIOL H - 294
1ewq_A_2821ewq   A     MSESELENOMETHIONINE P - 295
1ewq_A_2821ewq   A     MSESELENOMETHIONINE L - 296
1ewq_A_2821ewq   A     MSESELENOMETHIONINE L - 297
1kp8_A_531kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 53
1kp8_A_531kp8   A     KO4POTASSIUM ION, 4 WATERS COORDINATED G - 53
1kp8_A_531kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 54
1kp8_A_531kp8   A     KO4POTASSIUM ION, 4 WATERS COORDINATED V - 54
1kp8_A_531kp8   A     ATPADENOSINE-5'-TRIPHOSPHATE N - 82

Clusters included in this Subclass
CLUSTER: HH.4.286