Information on SUBCLASS 5.40.1 |
Subclass Accession number: 4932
Subclass: 5.40.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005524 (>75 %) GO:0030554 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 9.1 +/- 9.3 Average RMSD (Å) : 1.267 +/- 0.321 Consensus geometry
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Consensus Sequence: | XpXXhXXXh |
(φψ)-conformation: | aappbapaa |
Pattern: | [GL] | x | [AQS] | x | [ALW] | x | [ERY] | x | [DEP] | [LY] | x | x | [KPR] | [AFG] | [AEP] | x | [EMR] | [AG] | [AR] | x | x | x |
Conservation: | -0.604 | -1.158 | 0.436 | -0.578 | -0.433 | -1.592 | -0.144 | -0.723 | 1.160 | 1.297 | -1.158 | 0.823 | 0.726 | -0.578 | 0.001 | -0.723 | -0.144 | 2.575 | 0.998 | 0.581 | -1.013 | 0.252 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ewq_A_282 | 1ewq | A | 287 | 308 | LLQSWLRHPLLDRGPLEARLDR | HHHHHHHS----HHHHHHHHHH | aaaaaaabxxaxaaaaaaaaaa |
1kp8_A_53 | 1kp8 | A | 53 | 74 | GVSVAREIELEDKFENMGAQMV | HHHHHHH---SSHHHHHHHHHH | aaaaaaaxbbaxaaaaaaaaaa |
1rlr_*_478 | 1rlr | - | 489 | 510 | LDALLDYQDYPIPAAKRGAMGR | HHHHHHHS--SSHHHHHHHHHH | aaaaaaaxxbabaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ewq_A_282 | 1ewq | A | MSESELENOMETHIONINE | R - 293 |
1ewq_A_282 | 1ewq | A | EDO1,2-ETHANEDIOL | R - 293 |
1ewq_A_282 | 1ewq | A | MSESELENOMETHIONINE | H - 294 |
1ewq_A_282 | 1ewq | A | EDO1,2-ETHANEDIOL | H - 294 |
1ewq_A_282 | 1ewq | A | MSESELENOMETHIONINE | P - 295 |
1ewq_A_282 | 1ewq | A | MSESELENOMETHIONINE | L - 296 |
1ewq_A_282 | 1ewq | A | MSESELENOMETHIONINE | L - 297 |
1kp8_A_53 | 1kp8 | A | ATPADENOSINE-5'-TRIPHOSPHATE | G - 53 |
1kp8_A_53 | 1kp8 | A | KO4POTASSIUM ION, 4 WATERS COORDINATED | G - 53 |
1kp8_A_53 | 1kp8 | A | ATPADENOSINE-5'-TRIPHOSPHATE | V - 54 |
1kp8_A_53 | 1kp8 | A | KO4POTASSIUM ION, 4 WATERS COORDINATED | V - 54 |
1kp8_A_53 | 1kp8 | A | ATPADENOSINE-5'-TRIPHOSPHATE | N - 82 |
Clusters included in this Subclass |
CLUSTER: HH.4.286 |