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Information on SUBCLASS 6.1.1
Subclass Accession number: 4937
Subclass: 6.1.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 12.4 +/- 17.3
Average RMSD (Å) : 1.000 +/- 0.251

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hXXXXXhpXX
(φψ)-conformation: aalabpbpaa
Pattern: [FLMV]x[aefkl][fiklm][aly][aeknq][dgkr]x[agstv][ADPQ][AFIPV][DEPST][aikt]x[ailv]xx
Conservation:1.895-0.972-0.935-0.2570.554-0.156-0.467-0.439-0.3912.1470.1091.210-0.310-1.3170.719-0.356-1.034
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa7_A_1211aa7   A128144MGLIYNRMGAVTTEVAFHHHHHTTSS---HHHHHaaaaaavabbbxaaaaa
1jaf_A_51jaf   A2642VAAMAQGKAPFDAKVAAHHHHHTTSS---HHHHHaaaaaavabpxbaaaaa
1mvc_A_4221mvc   A437453FFFKLIGDTPIDTFLMEHHHHHHT-S---HHHHHaaaaaavabwbxaaaaa
1nn5_A_481nn5   A5369LSSYLQKKSDVEDHSVHHHHHHTTSS---HHHHHaaaaaavabbbpaaaaa
1omw_A_1141omw   A114130MKELLACSHPFSKSAIEHHHHHTT---S-HHHHHaaaaaalabwbxaaaaa
1ovl_A_5511ovl   A574590FYLKLEDLVPPPAIIDKHHHHHHTSS---HHHHHaaaaaalabpxxaaaaa
1p7g_A_461p7g   A6177LEKFRKGEAQIDIRAVLHHHHHTTSS---HHHHHaaaaaavabxbxaaaaa
1pdu_A_5111pdu   A527543FYLKLEDLVPAPALIENHHHHHH-SS---HHHHHaaaaaalabxxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 9
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 10
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 12
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 13
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 14
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 16
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 17
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 19
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 20
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 23
1jaf_A_51jaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 48
1mvc_A_4221mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID I - 428
1mvc_A_4221mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID K - 431
1mvc_A_4221mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID C - 432
1mvc_A_4221mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID H - 435
1mvc_A_4221mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID L - 436
1mvc_A_4221mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID F - 439
1mvc_A_4221mvc   A     BM64-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID L - 451
1nn5_A_481nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE L - 57
1nn5_A_481nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE H - 69
1nn5_A_481nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE F - 72
1nn5_A_481nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE S - 73
1nn5_A_481nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE R - 76
1ovl_A_5511ovl   A     MSESELENOMETHIONINE Y - 551
1ovl_A_5511ovl   A     MSESELENOMETHIONINE K - 554
1ovl_A_5511ovl   A     MSESELENOMETHIONINE L - 555
1ovl_A_5511ovl   A     MSESELENOMETHIONINE K - 558
1p7g_A_461p7g   A     MSESELENOMETHIONINE R - 74
1p7g_A_461p7g   A     MSESELENOMETHIONINE L - 77
1p7g_A_461p7g   A     MSESELENOMETHIONINE R - 78
1p7g_A_461p7g   A     MSESELENOMETHIONINE S - 81
1p7g_A_461p7g   A     MSESELENOMETHIONINE N - 85
1p7g_A_461p7g   A     MSESELENOMETHIONINE I - 92
1p7g_A_461p7g   A     MSESELENOMETHIONINE F - 93

Clusters included in this Subclass
CLUSTER: HH.6.33