ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.1.3

Subclass Accession number: 4939
Subclass: 6.1.3

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.1 (>50 %)  3.1.1 (>50 %)  3.1.1.3
GO : GO:0016298 (>75 %)  GO:0016788 (>75 %)  GO:0016789 (>75 %)
SCOP : 53473 (>75 %)  53474 (>75 %)  53577 (>75 %)

Number of loops: 3

Average sequence ID (%) : 78.6 +/- -42.6
Average RMSD (Å) : 0.433 +/- 0.058

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	WpGTpcFhAC
(φψ)-conformation:	aalabpbpaa

Pattern:	[IL]	[DN]	[G]	[I]	[W]	[EQ]	[G]	[T]	[QR]	[DN]	[F]	[AV]	[A]	[C]	[N]	[H]	[L]	[R]	[S]	[Y]	[K]	[Y]	[Y]	[AST]	[DES]	[S]	[I]	[L]
Conservation:	-0.899	-0.665	0.487	-0.441	2.808	-0.666	0.487	0.023	-0.898	-0.665	0.487	-1.360	-0.441	1.880	0.487	1.416	-0.441	0.023	-0.441	0.952	0.023	0.952	0.952	-1.421	-1.318	-0.441	-0.441	-0.441

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bu8_A_248	1bu8	A	248	275	INGIWEGTQNFVACNHLRSYKYYASSIL	HHHHHTTSS----HHHHHHHHHHHHHHH	aaaaaavabxbxaaaaaaaaaaaaaaaa
1hpl_A_248	1hpl	A	248	275	IDGIWQGTRDFAACNHLRSYKYYTDSIL	HHHHHTTSS----HHHHHHHHHHHHHHH	aaaaaavaxxbxaaaaaaaaaaaaaaaa
1rp1_*_248	1rp1	-	248	275	LDGIWEGTRDFVACNHLRSYKYYSESIL	HHHHHTT-S----HHHHHHHHHHHHHHH	aaaaaavabxbxaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass