ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.6.1

Subclass Accession number: 4946
Subclass: 6.6.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 11

Average sequence ID (%) : 48.9 +/- 25.6
Average RMSD (Å) : 0.418 +/- 0.172

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	AhKGhGTcEp
(φψ)-conformation:	aapepebpaa

Pattern:	[afvy]	x	[AC]	[EHKY]	[aekqrt]	[IL]	[HKQRY]	[HKQRY]	[AS]	[FILM]	[KRS]	[G]	[AILMW]	[G]	[T]	[DNR]	[DEH]	[dehk]	[almtv]	[IL]	[ilt]	[DEHKNRS]	[ILV]	[ILM]
Conservation:	-1.057	-0.986	0.380	-0.323	-1.133	0.644	-0.531	-0.514	0.458	-0.078	0.248	2.220	-1.039	2.220	1.632	0.012	0.375	-1.257	-0.913	0.477	-0.870	-0.794	0.516	0.314

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ala_*_17	1ala	-	19	42	ADAEALRKAMKGMGTDEETILKIL	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaaxexebxaaaaaaaa
1ala_*_91	1ala	-	91	114	FDAHALKHAIKGAGTNEKVLTEIL	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaaxexebbaaaaaaaa
1axn_*_21	1axn	-	23	46	VDAEAIQKAIRGIGTDEKMLISIL	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaapexebxaaaaaaaa
1axn_*_235	1axn	-	254	277	FLAERLHRALKGIGTDEFTLNRIM	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaaxebMxxaaaaaaaa
1axn_*_92	1axn	-	95	118	FDAKQLKKSMKGAGTNEDALIEIL	HHHHHHHHHH-SSS--HHHHHHHH	aaaaaaaaaaxexebxaaaaaaaa
1dm5_A_15	1dm5	A	17	40	EDAETLRKAMKGIGTDEKSITHIL	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaaxexebxaaaaaaaa
1g5n_A_15	1g5n	A	17	40	ADAEVLRKAMKGLGTDEDSILNLL	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaapexebxaaaaaaaa
1hm6_A_274	1hm6	A	277	300	FFAEKLHQAMKGIGTRHKTLIRIM	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaabexebxaaaaaaaa
1hvd_*_247	1hvd	-	250	273	YLAETLYYAMKGAGTDDHTLIRVM	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaapexebxaaaaaaaa
1hvd_*_88	1hvd	-	91	114	YDAYELKHALKGAGTNEKVLTEII	HHHHHHHHHHSSSS--HHHHHHHH	aaaaaaaaaapexebxaaaaaaaa
1n00_A_18	1n00	A	20	43	EDCEQLRKAFSGWGTNEGLIIDIL	HHHHHHHHHTSSSS--HHHHHHHH	aaaaaaaaaaxebebbaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ala_*_17	1ala	*	CACALCIUM ION	A - 27
1ala_*_17	1ala	*	CACALCIUM ION	M - 28
1ala_*_17	1ala	*	CACALCIUM ION	K - 29
1ala_*_17	1ala	*	CACALCIUM ION	G - 30
1ala_*_17	1ala	*	CACALCIUM ION	M - 31
1ala_*_17	1ala	*	CACALCIUM ION	G - 32
1ala_*_17	1ala	*	CACALCIUM ION	T - 33
1ala_*_91	1ala	*	CACALCIUM ION	A - 99
1ala_*_91	1ala	*	CACALCIUM ION	I - 100
1ala_*_91	1ala	*	CACALCIUM ION	K - 101
1ala_*_91	1ala	*	CACALCIUM ION	G - 102
1ala_*_91	1ala	*	CACALCIUM ION	A - 103
1ala_*_91	1ala	*	CACALCIUM ION	G - 104
1ala_*_91	1ala	*	CACALCIUM ION	T - 105
1axn_*_21	1axn	*	CACALCIUM ION	A - 31
1axn_*_21	1axn	*	CACALCIUM ION	I - 32
1axn_*_21	1axn	*	CACALCIUM ION	R - 33
1axn_*_21	1axn	*	CACALCIUM ION	G - 34
1axn_*_21	1axn	*	CACALCIUM ION	I - 35
1axn_*_21	1axn	*	CACALCIUM ION	G - 36
1axn_*_21	1axn	*	CACALCIUM ION	T - 37
1axn_*_92	1axn	*	CACALCIUM ION	S - 103
1axn_*_92	1axn	*	CACALCIUM ION	M - 104
1axn_*_92	1axn	*	CACALCIUM ION	K - 105
1axn_*_92	1axn	*	CACALCIUM ION	G - 106
1axn_*_92	1axn	*	CACALCIUM ION	A - 107
1axn_*_92	1axn	*	CACALCIUM ION	G - 108
1axn_*_92	1axn	*	CACALCIUM ION	T - 109
1axn_*_235	1axn	*	CACALCIUM ION	G - 235
1axn_*_235	1axn	*	CACALCIUM ION	E - 238
1g5n_A_15	1g5n	A	SGNN,O6-DISULFO-GLUCOSAMINE	R - 23
1g5n_A_15	1g5n	A	CACALCIUM ION	A - 25
1g5n_A_15	1g5n	A	UAP1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID	M - 26
1g5n_A_15	1g5n	A	SGNN,O6-DISULFO-GLUCOSAMINE	M - 26
1g5n_A_15	1g5n	A	CACALCIUM ION	M - 26
1g5n_A_15	1g5n	A	UAP1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID	K - 27
1g5n_A_15	1g5n	A	SGNN,O6-DISULFO-GLUCOSAMINE	K - 27
1g5n_A_15	1g5n	A	CACALCIUM ION	K - 27
1g5n_A_15	1g5n	A	UAP1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID	G - 28
1g5n_A_15	1g5n	A	SGNN,O6-DISULFO-GLUCOSAMINE	G - 28
1g5n_A_15	1g5n	A	CACALCIUM ION	G - 28
1g5n_A_15	1g5n	A	UAP1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID	L - 29
1g5n_A_15	1g5n	A	SGNN,O6-DISULFO-GLUCOSAMINE	L - 29
1g5n_A_15	1g5n	A	CACALCIUM ION	L - 29
1g5n_A_15	1g5n	A	UAP1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID	G - 30
1g5n_A_15	1g5n	A	CACALCIUM ION	T - 31
1g5n_A_15	1g5n	A	CACALCIUM ION	D - 32
1g5n_A_15	1g5n	A	CACALCIUM ION	E - 33
1hvd_*_88	1hvd	*	CACALCIUM ION	L - 100
1hvd_*_247	1hvd	*	CACALCIUM ION	A - 258
1hvd_*_247	1hvd	*	CACALCIUM ION	M - 259
1hvd_*_247	1hvd	*	CACALCIUM ION	K - 260
1hvd_*_247	1hvd	*	CACALCIUM ION	G - 261
1hvd_*_247	1hvd	*	CACALCIUM ION	A - 262
1hvd_*_247	1hvd	*	CACALCIUM ION	G - 263
1hvd_*_247	1hvd	*	CACALCIUM ION	T - 264

Clusters included in this Subclass

CLUSTER: HH.6.22