Information on SUBCLASS 6.12.1 |
Subclass Accession number: 4953
Subclass: 6.12.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 24.7 +/- 24.6 Average RMSD (Å) : 0.633 +/- 0.231 Consensus geometry
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Consensus Sequence: | XXcLXXhXXX |
(φψ)-conformation: | aalpppppaa |
Pattern: | [LP] | x | [KR] | [LM] | [EF] | [KNQ] | [EMY] | [AGV] | [DK] | [D] | [FV] | [FV] | [KT] | [AS] | [KLM] | [GN] | [L] | [ALT] | x | [LPV] | [PT] | [PQS] | [DEG] | [AF] | [FW] | [DNS] | [KN] |
Conservation: | -0.361 | -1.648 | 0.995 | 0.818 | -0.502 | -0.165 | -1.023 | -0.945 | 0.172 | 2.644 | 0.060 | 0.060 | -0.081 | 0.228 | -0.633 | 0.751 | 1.239 | -0.867 | -1.413 | -1.023 | 0.425 | -0.633 | -0.399 | -0.277 | 2.223 | -0.009 | 0.369 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j37_A_296 | 1j37 | A | 296 | 322 | PLKMFQMGDDFFTSMNLTKLPQDFWDK | HHHHHHHHHHHHHHTT-----HHHHHH | aaaaaaaaaaaaaaavxxxxxaaaaaa |
1knv_A_43 | 1knv | A | 47 | 73 | LDKLENYVKDVVKAKGLAIPTSGAFSN | HHHHHHHHHHHHHHHT-----HHHHHH | aaaaaaaaaaaaaaavbxxxpaaaaaa |
1o8a_A_312 | 1o8a | A | 312 | 338 | PRRMFKEADDFFTSLGLLPVPPEFWNK | HHHHHHHHHHHHHHTT-----HHHHHH | aaaaaaaaaaaaaaavxxwxxaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1o8a_A_312 | 1o8a | A | NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE | R - 313 |
1o8a_A_312 | 1o8a | A | NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE | P - 333 |
1o8a_A_312 | 1o8a | A | NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE | W - 336 |
1o8a_A_312 | 1o8a | A | NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE | N - 337 |
1o8a_A_312 | 1o8a | A | NDG2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE | K - 338 |
Clusters included in this Subclass |
CLUSTER: HH.6.175 |