ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.22.1

Subclass Accession number: 4965
Subclass: 6.22.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 60.0 +/- 20.7
Average RMSD (Å) : 0.360 +/- 0.055

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 45-90

rho (°): 315-360

Consensus Sequence:	DLIPXGpXXp
(φψ)-conformation:	aabpplppaa

Pattern:	[D]	[DE]	[D]	[L]	[IV]	[P]	[FR]	[G]	[AST]	[DPST]	[ADP]	[QS]	[ET]	[R]	[ADE]	[EGQ]	[HI]	[IV]	[AKR]	[GR]	[F]	[KR]	[KQR]	[AG]	[L]	[D]	[DE]	[T]
Conservation:	1.398	0.286	1.398	0.306	0.052	1.944	-1.004	1.398	-0.807	-1.331	-1.312	-0.617	-0.673	0.852	-0.979	-1.113	-1.133	0.033	-0.983	-0.853	1.398	0.039	-0.473	-0.556	0.306	1.398	0.174	0.852

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bxb_A_54	1bxb	A	54	81	DEDLIPRGTPPQERDQIVRRFKKALDET	HHHHS-TT--TTHHHHHHHHHHHHHHHH	aaaabxpvxxaaaaaaaaaaaaaaaaaa
1bxc_A_54	1bxc	A	54	81	DEDLIPRGTPPQERDQIVRRFKRALDET	HHHHS-SS--HHHHHHHHHHHHHHHHHH	aaaabxpvbwaaaaaaaaaaaaaaaaaa
1mnz_A_55	1mnz	A	55	82	DDDLIPFGSSDSEREEHVKRFRQALDDT	HHHHS-TT--HHHHHHHHHHHHHHHHHH	aaaabppvxxaaaaaaaaaaaaaaaaaa
1qt1_A_54	1qt1	A	54	81	DDDLIPFGATDSERAEHIKRFRQGLDET	HHHHS-TT--HHHHHHHHHHHHHHHHHH	aaaabppvxxaaaaaaaaaaaaaaaaaa
1xim_A_55	1xim	A	55	82	DDDLVPFGSDAQTRDGIIAGFKKALDET	HHHHS-TT--HHHHHHHHHHHHHHHHHH	aaaabppvxxaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1mnz_A_55	1mnz	A	MPD2-METHYL-2,4-PENTANEDIOL	D - 57

Clusters included in this Subclass