Logo
Information on SUBCLASS 6.23.1
Subclass Accession number: 4966
Subclass: 6.23.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 56.8 +/- 21.6
Average RMSD (Å) : 0.340 +/- 0.152

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXGLpXXSAp
(φψ)-conformation: aagaaappaa
Pattern: [hp][KQ][AK][F][F][AQ][KLMT][SV][G][L][KST][AKS][KM][S][A][DNS][DQ][IV][K][DK][AIV][F][fhkr][AFIV][IL]
Conservation:-0.4480.098-0.5791.7111.711-0.694-1.313-0.9921.7110.579-0.810-0.876-0.5530.5790.579-0.3610.0660.3301.145-0.351-0.6681.711-1.594-1.0690.084
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bu3_*_261bu3   -2650YKAFFAKVGLTAKSADDIKKAFFVIHHHHHHHHTGGGS-HHHHHHHHHHHaaaaaaaavaaaxxaaaaaaaaaaa
1cdp_*_261cdp   -2650HKAFFAKVGLTSKSADDVKKAFAIIHHHHHHHHTGGGS-HHHHHHHHHHHaaaaaaaavaaaxxaaaaaaaaaaa
1pva_A_261pva   A2650HKKFFALVGLKAMSANDVKKVFKAIHHHHHHHHT-TTS-HHHHHHHHHHHaaaaaaaagaaaxxaaaaaaaaaaa
1rro_*_261rro   -2650PQKFFQTSGLSKMSASQVKDIFRFIHHHHHHHHSGGGS-HHHHHHHHHHHaaaaaaaavaaaxxaaaaaaaaaaa
1rwy_A_261rwy   A2650HKKFFQMVGLKKKSADDVKKVFHILHHHHHHHHTGGGS-HHHHHHHHHHHaaaaaaaagaaabxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bu3_*_261bu3   *     CACALCIUM ION I - 50
1cdp_*_261cdp   *     CDCADMIUM ION I - 50
1rro_*_261rro   *     CACALCIUM ION S - 36
1rro_*_261rro   *     CACALCIUM ION K - 37
1rro_*_261rro   *     CACALCIUM ION M - 38
1rro_*_261rro   *     CACALCIUM ION S - 39
1rwy_A_261rwy   A     CACALCIUM ION L - 50

Clusters included in this Subclass
CLUSTER: HH.5.121