ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.34.1

Subclass Accession number: 4977
Subclass: 6.34.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
SCOP : 47161 (>50 %) 69000 (>50 %) 69001 (>50 %)

Number of loops: 3

Average sequence ID (%) : 20.0 +/- 21.1
Average RMSD (Å) : 0.933 +/- 0.321

Consensus geometry

d (Å): 21

delta (°): 135-180

theta (°): 45-90

rho (°): 0-45

Consensus Sequence:	phcpXXXpXX
(φψ)-conformation:	aagpppppaa

Pattern:	x	[CW]	[HQR]	[IL]	[HI]	[NS]	[EK]	[IV]	[AN]	[ERT]	[KRY]	[LM]	[GK]	[KY]	[DP]	x	[FHY]	[DY]	[CN]	[ANS]	[RT]	x	x	x	[DRW]
Conservation:	-2.034	1.759	0.110	0.885	0.119	1.101	0.967	1.256	-0.140	-0.767	-0.572	0.969	0.163	-0.095	1.040	-1.352	0.987	-0.172	0.709	-0.475	0.195	-0.962	-1.352	-0.890	-1.449

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aa6_*_478	1aa6	-	478	502	DWQIISEIATRMGYPMHYNNTQEIW	HHHHHHHHHHHTT-----SSHHHHH	aaaaaaaaaaaagbpbbbabaaaaa
1jr8_A_75	1jr8	A	82	106	GCHIHNKVNEYLKKDIYDCATILED	HHHHHHHHHHHTT------TTHHHH	aaaaaaaaaaaavxxxxxaaaaaaa
1oqc_A_83	1oqc	A	90	114	LCRLHNEVNRKLGKPDFDCSRVDER	HHHHHHHHHHHTT-----GGGHHHH	aaaaaaaaaaaavxpxxxaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aa6_*_478	1aa6	*	MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE	D - 478
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 82
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 83
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	H - 84
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 85
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	H - 86
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	N - 87
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 89
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	N - 90
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 92
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 93
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 95
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	D - 96
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 97
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 98
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 100
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 103
1jr8_A_75	1jr8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	D - 106
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 90
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 91
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 92
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	H - 94
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	N - 95
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 97
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	N - 98
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 100
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 101
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 103
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 104
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	D - 105
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	F - 106
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 108
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 111
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 114
1oqc_A_83	1oqc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	W - 115

Clusters included in this Subclass

CLUSTER: HH.9.58