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Information on SUBCLASS 2.2.28
Subclass Accession number: 498
Subclass: 2.2.28 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.4.21 (>50 %)  
GO : GO:0004175 (>75 %)  GO:0004252 (>75 %)  GO:0004252 (>75 %)  GO:0008233 (>75 %)  GO:0008236 (>75 %)  GO:0008236 (>75 %)  
SCOP : 50493 (>75 %)  50493 (>75 %)  50494 (>75 %)  50494 (>75 %)  50514 (>75 %)  50514 (>75 %)  53447 (>75 %)  53448 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 5.6 +/- 10.1
Average RMSD (Å) : 0.475 +/- 0.150

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XpXcXh
(φψ)-conformation: bbaabb
Pattern: [GIKV]x[ADNV][DKN]xx
Conservation:-0.891-0.127-0.5091.949-0.067-0.356
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fo8_A_2061fo8   A210215VEDDLEEETTEEbxaabb
1h30_A_2901h30   A290295KSVKSLEETTEEbbaabb
1jyk_A_1011jyk   A104109IDADNYEETTEEbxaabb
1ogq_A_801ogq   A8590GINNLVEETTEEvbaaxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fo8_A_2061fo8   A     MMCMETHYL MERCURY ION V - 210
1fo8_A_2061fo8   A     MMCMETHYL MERCURY ION E - 211
1fo8_A_2061fo8   A     MMCMETHYL MERCURY ION D - 212
1fo8_A_2061fo8   A     MMCMETHYL MERCURY ION D - 213
1fo8_A_2061fo8   A     MMCMETHYL MERCURY ION L - 214
1fo8_A_2061fo8   A     MMCMETHYL MERCURY ION E - 215
1fo8_A_2061fo8   A     MMCMETHYL MERCURY ION V - 216
1jyk_A_1011jyk   A     MSESELENOMETHIONINE Y - 102
1jyk_A_1011jyk   A     MSESELENOMETHIONINE L - 110
1ogq_A_801ogq   A     ACTACETATE ION G - 85
1ogq_A_801ogq   A     NAGN-ACETYL-D-GLUCOSAMINE I - 86
1ogq_A_801ogq   A     ACTACETATE ION I - 86
1ogq_A_801ogq   A     NAGN-ACETYL-D-GLUCOSAMINE N - 87
1ogq_A_801ogq   A     ACTACETATE ION N - 87
1ogq_A_801ogq   A     NAGN-ACETYL-D-GLUCOSAMINE N - 88
1ogq_A_801ogq   A     ACTACETATE ION N - 88
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ogq_A_801ogq   A AC5ACT BINDING SITE FOR CHAIN AG - 85
1ogq_A_801ogq   A AC5ACT BINDING SITE FOR CHAIN AI - 86
1ogq_A_801ogq   A AC2NAG BINDING SITE FOR CHAIN AN - 87

Clusters included in this Subclass
CLUSTER: HA.1.62