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Information on SUBCLASS 6.39.1
Subclass Accession number: 4982
Subclass: 6.39.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0000287 (>50 %)  GO:0005489 (>50 %)  GO:0016168 (>50 %)  GO:0042314 (>50 %)  GO:0045156 (>50 %)  GO:0046906 (>50 %)  
SCOP : 81482 (>75 %)  81483 (>75 %)  81484 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 65.2 +/- -15.6
Average RMSD (Å) : 0.333 +/- 0.058

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: phhphXYNPh
(φψ)-conformation: aaebaaapaa
Pattern: [ST][H][L][D][W][V][NS][N][FTV][G][Y][QT][FY][GL][HN][FW][FH][Y][N][P][AG][H][M]x[AS][IV][S][F][FL][F][TV][N][AC][LM][A][L][AGS][LM][H][G][AGS][L][IV][L][S][AV]
Conservation:-0.7381.668-0.1530.7583.034-0.153-0.6510.758-1.5190.7581.213-1.0280.250-1.767-0.1910.071-0.5211.2130.7581.213-0.8751.6680.302-1.569-0.825-0.377-0.1530.758-0.7590.758-0.9040.758-0.644-0.514-0.153-0.153-1.165-0.5171.6680.758-1.165-0.153-0.375-0.153-0.153-1.040
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dxr_L_1521dxr   L152197SHLDWVNNFGYQYLNWFYNPGHMSSVSFLFVNAMALGLHGGLILSVHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaGbaaaxaaaaaaaaaaaaaaaaaaaaaaaaaaa
1eys_L_1601eys   L160205SHLDWVSNVGYQFLHFHYNPAHMLAISFFFTNCLALSMHGSLILSVHHHHHHHHHHGGGS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaagbaaaxaaaaaaaaaaaaaaaaaaaaaaaaaaa
1rzh_L_1521rzh   L152197THLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHaaaaaaaaaaaaaexaaaxaaaaaaaaaaaaaaaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B H - 153
1dxr_L_1521dxr   L     BPBBACTERIOPHEOPHYTIN B H - 153
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B L - 154
1dxr_L_1521dxr   L     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 154
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B W - 156
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B V - 157
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B N - 158
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B N - 159
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B F - 160
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B G - 161
1dxr_L_1521dxr   L     HECHEME C Y - 162
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B Y - 162
1dxr_L_1521dxr   L     HECHEME C L - 165
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B N - 166
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B W - 167
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B F - 168
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B N - 170
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B G - 172
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B H - 173
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B M - 174
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B S - 175
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B S - 176
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B V - 177
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B S - 178
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B F - 179
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B L - 180
1dxr_L_1521dxr   L     BPBBACTERIOPHEOPHYTIN B L - 180
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B F - 181
1dxr_L_1521dxr   L     BPBBACTERIOPHEOPHYTIN B F - 181
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B V - 182
1dxr_L_1521dxr   L     BPBBACTERIOPHEOPHYTIN B V - 182
1dxr_L_1521dxr   L     BPBBACTERIOPHEOPHYTIN B A - 184
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B M - 185
1dxr_L_1521dxr   L     BPBBACTERIOPHEOPHYTIN B M - 185
1dxr_L_1521dxr   L     MST2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE M - 185
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B A - 186
1dxr_L_1521dxr   L     MST2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE A - 186
1dxr_L_1521dxr   L     MST2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE L - 187
1dxr_L_1521dxr   L     BPBBACTERIOPHEOPHYTIN B G - 188
1dxr_L_1521dxr   L     BCBBACTERIOCHLOROPHYLL B L - 189
1dxr_L_1521dxr   L     BPBBACTERIOPHEOPHYTIN B L - 189
1dxr_L_1521dxr   L     MST2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE L - 189
1dxr_L_1521dxr   L     FE2FE (II) ION H - 190
1dxr_L_1521dxr   L     MST2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE H - 190
1dxr_L_1521dxr   L     MST2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE L - 193
1dxr_L_1521dxr   L     FE2FE (II) ION I - 194
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A H - 161
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A H - 161
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A L - 162
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A W - 164
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A V - 165
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A S - 166
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A N - 167
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A V - 168
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A G - 169
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A Y - 170
1eys_L_1601eys   L     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 170
1eys_L_1601eys   L     HEMPROTOPORPHYRIN IX CONTAINING FE L - 173
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A H - 174
1eys_L_1601eys   L     HEMPROTOPORPHYRIN IX CONTAINING FE H - 174
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A F - 175
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A H - 176
1eys_L_1601eys   L     BGLB-2-OCTYLGLUCOSIDE P - 179
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A H - 181
1eys_L_1601eys   L     BGLB-2-OCTYLGLUCOSIDE M - 182
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A M - 182
1eys_L_1601eys   L     BGLB-2-OCTYLGLUCOSIDE L - 183
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A L - 183
1eys_L_1601eys   L     BGLB-2-OCTYLGLUCOSIDE A - 184
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A A - 184
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A I - 185
1eys_L_1601eys   L     BGLB-2-OCTYLGLUCOSIDE S - 186
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A S - 186
1eys_L_1601eys   L     BGLB-2-OCTYLGLUCOSIDE F - 187
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A F - 187
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A F - 188
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A F - 188
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A F - 189
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A F - 189
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A T - 190
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A T - 190
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A C - 192
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A C - 192
1eys_L_1601eys   L     BCLBACTERIOCHLOROPHYLL A L - 193
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A L - 193
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A S - 196
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A M - 197
1eys_L_1601eys   L     FEFE (III) ION H - 198
1eys_L_1601eys   L     BPHBACTERIOPHEOPHYTIN A S - 200
1eys_L_1601eys   L     FEFE (III) ION I - 202
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A H - 153
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A H - 153
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A L - 154
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A W - 156
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A V - 157
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A S - 158
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A N - 159
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A T - 160
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A G - 161
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A Y - 162
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A G - 165
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A N - 166
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A F - 167
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A H - 168
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A H - 173
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A M - 174
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A I - 175
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A A - 176
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A I - 177
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A S - 178
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A F - 179
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A F - 180
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A F - 180
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A F - 181
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A F - 181
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A T - 182
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A T - 182
1rzh_L_1521rzh   L     U10UBIQUINONE-10 T - 182
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A A - 184
1rzh_L_1521rzh   L     BCLBACTERIOCHLOROPHYLL A L - 185
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A L - 185
1rzh_L_1521rzh   L     U10UBIQUINONE-10 L - 185
1rzh_L_1521rzh   L     U10UBIQUINONE-10 A - 186
1rzh_L_1521rzh   L     U10UBIQUINONE-10 L - 187
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A A - 188
1rzh_L_1521rzh   L     U10UBIQUINONE-10 A - 188
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A L - 189
1rzh_L_1521rzh   L     U10UBIQUINONE-10 L - 189
1rzh_L_1521rzh   L     U10UBIQUINONE-10 H - 190
1rzh_L_1521rzh   L     U10UBIQUINONE-10 G - 191
1rzh_L_1521rzh   L     BPHBACTERIOPHEOPHYTIN A A - 192
1rzh_L_1521rzh   L     U10UBIQUINONE-10 L - 193
1rzh_L_1521rzh   L     FE2FE (II) ION V - 194
1rzh_L_1521rzh   L     CDLCARDIOLIPIN L - 195

Clusters included in this Subclass
CLUSTER: HH.8.108