ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 7.3.1

Subclass Accession number: 5006
Subclass: 7.3.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 8

Average sequence ID (%) : 44.9 +/- 26.1
Average RMSD (Å) : 0.337 +/- 0.130

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XpRXXMVQTpX
(φψ)-conformation:	aabplplabaa

Pattern:	[aimv]	x	[gknqs]	x	[iv]	[ckqrst]	x	[ilmv]	[r]	[astv]	[dqr]	[r]	[cgnpsv]	x	[m]	[v]	[q]	[t]	[des]	x	[q]	[y]	x	x	[civ]	[hy]	x	[a]	[ailv]	x	x	x	x
Conservation:	-0.238	-0.928	-0.699	-1.067	0.637	-0.913	-1.070	0.038	1.331	-0.516	-0.015	1.331	-1.259	-0.967	1.331	0.844	1.331	1.331	0.163	-0.800	1.331	2.303	-0.893	-0.235	0.014	1.198	-1.081	0.844	-0.268	-0.875	-0.592	-0.403	-1.206

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fpr_A_486	1fpr	A	486	518	IQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFI	HHHHHHHHHTTSTTSS-SSHHHHHHHHHHHHHH	aaaaaaaaaaabxgpvabaaaaaaaaaaaaaaa
1jln_A_508	1jln	A	508	540	ALSIVCQLRVDRGGMVQTSEQYEFVHHALCLFE	HHHHHHHHHHHSTTSS-SHHHHHHHHHHHHHHH	aaaaaaaaaaabpvpvabaaaaaaaaaaaaaaa
1lar_A_1550	1lar	A	1550	1582	IYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA	HHHHHHHHHTTSTTSS-SHHHHHHHHHHHHHHH	aaaaaaaaaaabplpvabaaaaaaaaaaaaaaa
1lar_A_1841	1lar	A	1841	1873	MFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYL	HHHHHHHHTTTSTTSS-SHHHHHHHHHHHHHHH	aaaaaaaaaaabxvpvabaaaaaaaaaaaaaaa
1lar_B_1841	1lar	B	1841	1873	MFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYL	HHHHHHHHHTTSTTSS-SHHHHHHHHHHHHHHH	aaaaaaaaaaabxvpvabaaaaaaaaaaaaaaa
1rpm_A_1123	1rpm	A	1123	1155	IYNCVRELRSRRVNMVQTEEQYVFIHDAILEAC	HHHHHHHHHHHSTTSS-SHHHHHHHHHHHHHHH	aaaaaaaaaaabplpvabaaaaaaaaaaaaaaa
1yfo_A_461	1yfo	A	461	493	VYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHY	HHHHHHHHTTTSTTSS-SHHHHHHHHHHHHHHH	aaaaaaaaaaabxlxvabaaaaaaaaaaaaaaa
2shp_A_490	2shp	A	490	522	VPKTIQMVRSQRSGMVQTEAQYRSIYMAVQHYI	HHHHHHHHHTTSTTSS--HHHHHHHHHHHHHHH	aaaaaaaaaaabxvpMabaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fpr_A_486	1fpr	A	PTRO-PHOSPHOTYROSINE	Q - 502
1fpr_A_486	1fpr	A	PTRO-PHOSPHOTYROSINE	Q - 506
2shp_A_490	2shp	A	CATDODECANE-TRIMETHYLAMINE	Q - 510
2shp_A_490	2shp	A	CATDODECANE-TRIMETHYLAMINE	S - 513
2shp_A_490	2shp	A	CATDODECANE-TRIMETHYLAMINE	I - 514
2shp_A_490	2shp	A	CATDODECANE-TRIMETHYLAMINE	M - 516
2shp_A_490	2shp	A	CATDODECANE-TRIMETHYLAMINE	A - 517

Clusters included in this Subclass