ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 7.17.1

Subclass Accession number: 5020
Subclass: 7.17.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0003700 (>75 %) GO:0003707 (>75 %) GO:0004872 (>75 %) GO:0004879 (>75 %) GO:0004887 (>50 %)
SCOP : 48507 (>75 %) 48508 (>75 %) 48509 (>75 %)

Number of loops: 3

Average sequence ID (%) : 52.3 +/- 5.5
Average RMSD (Å) : 0.567 +/- 0.153

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	LMSXDRXhLXX
(φψ)-conformation:	aapaapplpaa

Pattern:	[DE]	[DT]	[E]	[IV]	[A]	[L]	[FL]	[QS]	[A]	[FV]	[LV]	[L]	[M]	[S]	[AST]	[D]	[R]	[PS]	[GW]	[L]	x	[CE]	[KV]	x	[KR]	[I]	[E]	[K]	x	[Q]	[DEQ]	[AKS]	[FIY]	x	[L]	[A]	[FL]	[EQ]	[H]	[VY]	[ILV]	[NQ]	[HKY]	[NR]
Conservation:	0.410	-0.637	1.178	0.198	0.522	0.522	-0.517	-0.571	0.522	-0.841	-0.450	0.522	1.178	0.522	-0.865	1.835	1.178	-0.741	-0.113	0.522	-1.740	-0.922	-1.294	-1.448	0.245	0.522	1.178	1.178	-1.740	1.178	-0.354	-1.156	-0.573	-1.294	0.522	0.522	-0.367	0.206	3.148	-0.487	-0.354	-0.238	-0.792	-0.313

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1n46_A_367	1n46	A	367	410	DTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYR	HHHHHHHHHHHHT-TTSTT-S-HHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaaxaaxxvxaaaaaaaaaaaaaaaaaaaaaaaa
1n83_A_417	1n83	A	417	460	EDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKN	HHHHHHHHHHHHS-TTSTT-S-HHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaaxaaxxvxaaaaaaaaaaaaaaaaaaaaaaaa
1nav_A_313	1nav	A	313	356	DTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHR	HHHHHHHHHHHHS---SSS-S-HHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaxbaaxxvxaaaaaaaaaaaaaaaaaaaaaaaa

Clusters included in this Subclass