ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.5.1

Subclass Accession number: 5033
Subclass: 8.5.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 8

Average sequence ID (%) : 20.3 +/- 25.8
Average RMSD (Å) : 1.613 +/- 0.647

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hppXXXppXDXX
(φψ)-conformation:	aapaapabppaa

Pattern:	[nrwy]	[ILY]	[egn]	[KNRY]	[ay]	[AGNT]	[DNSTY]	x	x	x	[kqrs]	[EKQSW]	x	[CD]	[HKRW]	[AEPS]	x	[aiv]	x	[egkns]	[FHIV]	[CQT]	[ADER]	[ekqw]	[FGILV]
Conservation:	0.136	1.409	-0.675	0.215	0.145	0.490	-0.155	-0.708	-0.685	-1.158	0.237	0.038	-1.426	2.617	1.314	0.185	-1.084	-0.102	-1.118	-1.056	0.222	1.909	0.426	-0.780	-0.397

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d5a_A_493	1d5a	A	493	517	YYGYYAYANARWYCRECAESVTAWG	HHHHHT-TT-TT--HHHHHHHHHHH	aaaaaaxaaxaapbaaaaaaaaaaa
1dvp_A_5	1dvp	A	9	33	NLENATSHLRLEPDWPSILLICDEI	HHHHHH-TT-SS--HHHHHHHHHHH	aaaaaapaaxabpxaaaaaaaaaaa
1elk_A_12	1elk	A	16	40	RIEKATDGSLQSEDWALNMEICDII	HHHHHT-TT-SS--HHHHHHHHHHH	aaaaaaxaaxabpbaaaaaaaaaaa
1g4y_B_414	1g4y	B	432	456	WLIYKNTKLVKKIDHAKVRKHQRKF	HHHHHHHHS-SS--HHHHHHHHHHH	aaaaaaaNababxxaaaaaaaaaaa
1juq_A_9	1juq	A	12	36	WLNKATNPSNRQEDWEYIIGFCDQI	HHHHHT-TT-SS--HHHHHHHHHHH	aaaaaapaapabxbaaaaaaaaaaa
1mhq_A_26	1mhq	A	29	53	WLNKATDPSMSEQDWSAIQNFCEQV	HHHHHH-TT-SS--HHHHHHHHHHH	aaaaaapaaxabxxaaaaaaaaaaa
1tgo_A_493	1tgo	A	493	517	FYGYYGYAKARWYCKECAESVTAWG	HHHHHH-TT-TT--HHHHHHHHHHH	aaaaaaxaaxaapbaaaaaaaaaaa
1ujk_A_10	1ujk	A	13	37	RINRATNPLNKELDWASINGFCEQL	HHHHHT-TT-SS--HHHHHHHHHHH	aaaaaapaaxabpxaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass